| Guiding the folding pathway of DNA origami KE Dunn, F Dannenberg, TE Ouldridge, M Kwiatkowska, AJ Turberfield, ... Nature 525 (7567), 82-86, 2015 | 202 | 2015 |
| Precise parameter synthesis for stochastic biochemical systems M Češka, F Dannenberg, N Paoletti, M Kwiatkowska, L Brim Acta Informatica 54, 589-623, 2017 | 123 | 2017 |
| DNA walker circuits: computational potential, design, and verification F Dannenberg, M Kwiatkowska, C Thachuk, AJ Turberfield Natural Computing 14, 195-211, 2015 | 97 | 2015 |
| Modelling DNA origami self-assembly at the domain level F Dannenberg, KE Dunn, J Bath, M Kwiatkowska, AJ Turberfield, ... The Journal of chemical physics 143 (16), 2015 | 42 | 2015 |
| Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems J Berleant, C Berlind, S Badelt, F Dannenberg, J Schaeffer, E Winfree Journal of the Royal Society Interface 15 (149), 20180107, 2018 | 21 | 2018 |
| Computing cumulative rewards using fast adaptive uniformization F Dannenberg, EM Hahn, M Kwiatkowska ACM Transactions on Modeling and Computer Simulation (TOMACS) 25 (2), 1-23, 2015 | 20 | 2015 |
| Inferring parameters for an elementary step model of DNA structure kinetics with locally context-dependent Arrhenius rates S Zolaktaf, F Dannenberg, X Rudelis, A Condon, JM Schaeffer, M Schmidt, ... International Conference on DNA-Based Computers, 172-187, 2017 | 11 | 2017 |
| Efficient parameter estimation for DNA kinetics modeled as continuous-time Markov chains S Zolaktaf, F Dannenberg, E Winfree, A Bouchard-Côté, M Schmidt, ... DNA Computing and Molecular Programming: 25th International Conference, DNA …, 2019 | 6 | 2019 |
| Modelling and verification for DNA nanotechnology F Dannenberg University of Oxford, 2016 | 6 | 2016 |
| Arithmetic self-similarity of infinite sequences D Hendriks, FGW Dannenberg, J Endrullis, M Dow, JW Klop arXiv preprint arXiv:1201.3786, 2012 | 5 | 2012 |
| Predicting DNA kinetics with a truncated continuous-time Markov chain method S Zolaktaf, F Dannenberg, M Schmidt, A Condon, E Winfree Computational Biology and Chemistry 104, 107837, 2023 | 3 | 2023 |
| The pathway elaboration method for mean first passage time estimation in large continuous-time Markov chains with applications to nucleic acid kinetics S Zolaktaf, F Dannenberg, M Schmidt, A Condon, E Winfree arXiv preprint arXiv:2101.03657, 2021 | 3 | 2021 |
| Symbolic dynamics and automata theory FGW Dannenberg Master’s thesis, Delft University of Technology, 2011 | 3 | 2011 |
| Folding pathways: DNA origami as a model system KE Dunn, F Dannenberg, TE Ouldridge, M Kwiatkowska, J Bath, ... EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44, S67-S67, 2015 | | 2015 |
| Automated Sequence-Level Analysis of Kinetics and Thermodynamics for Domain-Level DNA Strand-Displacement Systems: Supplementary Information (Technical Appendix) J Berleant, C Berlind, S Badelt, F Dannenberg, J Schaeffer, E Winfree | | |
Marta KwiatkowskaProfessor of Computing Systems, University of OxfordVerified email at comlab.ox.ac.uk
