| The evolution of SARS-CoV-2 PV Markov, M Ghafari, M Beer, K Lythgoe, P Simmonds, NI Stilianakis, ... Nature Reviews Microbiology 21 (6), 361-379, 2023 | 578 | 2023 |
| Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant B Li, A Deng, K Li, Y Hu, Z Li, Y Shi, Q Xiong, Z Liu, Q Guo, L Zou, ... Nature communications 13 (1), 460, 2022 | 503 | 2022 |
| SARS-CoV-2 within-host diversity and transmission KA Lythgoe, M Hall, L Ferretti, M de Cesare, G MacIntyre-Cockett, ... Science 372 (6539), eabg0821, 2021 | 327 | 2021 |
| Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective C Fraser, K Lythgoe, GE Leventhal, G Shirreff, TD Hollingsworth, S Alizon, ... Science 343 (6177), 1243727, 2014 | 292 | 2014 |
| OpenABM-Covid19—An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing R Hinch, WJM Probert, A Nurtay, M Kendall, C Wymant, M Hall, K Lythgoe, ... PLoS computational biology 17 (7), e1009146, 2021 | 243 | 2021 |
| Effective configurations of a digital contact tracing app: a report to NHSX R Hinch, W Probert, A Nurtay, M Kendall, C Wymant, M Hall, K Lythgoe, ... Retrieved July 23, 2020, 2020 | 239 | 2020 |
| Challenges in control of COVID-19: short doubling time and long delay to effect of interventions L Pellis, F Scarabel, HB Stage, CE Overton, LHK Chappell, E Fearon, ... Philosophical Transactions of the Royal Society B 376 (1829), 20200264, 2021 | 172 | 2021 |
| Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics L Dyson, EM Hill, S Moore, J Curran-Sebastian, MJ Tildesley, KA Lythgoe, ... Nature Communications 12 (1), 5730, 2021 | 105 | 2021 |
| Preexposure prophylaxis will have a limited impact on HIV-1 drug resistance in sub-Saharan Africa: a comparison of mathematical models DAMC Van De Vijver, BE Nichols, UL Abbas, CAB Boucher, V Cambiano, ... Aids 27 (18), 2943-2951, 2013 | 102 | 2013 |
| Time to evaluate COVID-19 contact-tracing apps V Colizza, E Grill, R Mikolajczyk, C Cattuto, A Kucharski, S Riley, ... Nature Medicine 27 (3), 361-362, 2021 | 100 | 2021 |
| New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels KA Lythgoe, C Fraser Proceedings of the Royal Society B: Biological Sciences 279 (1741), 3367-3375, 2012 | 100 | 2012 |
| What the genome sequence is revealing about trypanosome antigenic variation JD Barry, L Marcello, LJ Morrison, AF Read, K Lythgoe, N Jones, ... Biochemical Society Transactions 33 (5), 986-989, 2005 | 91 | 2005 |
| Parasite-intrinsic factors can explain ordered progression of trypanosome antigenic variation KA Lythgoe, LJ Morrison, AF Read, JD Barry Proceedings of the National Academy of Sciences 104 (19), 8095-8100, 2007 | 89 | 2007 |
| A transmission-virulence evolutionary trade-off explains attenuation of HIV-1 in Uganda F Blanquart, MK Grabowski, J Herbeck, F Nalugoda, D Serwadda, ... Elife 5, e20492, 2016 | 75 | 2016 |
| Is HIV short-sighted? Insights from a multistrain nested model KA Lythgoe, L Pellis, C Fraser Evolution 67 (10), 2769-2782, 2013 | 66 | 2013 |
| The impact of viral mutations on recognition by SARS-CoV-2 specific T cells TI de Silva, G Liu, BB Lindsey, D Dong, SC Moore, NS Hsu, D Shah, ... Iscience 24 (11), 2021 | 65 | 2021 |
| On the diverse and opposing effects of nutrition on pathogen virulence VL Pike, KA Lythgoe, KC King Proceedings of the Royal Society B 286 (1906), 20191220, 2019 | 62 | 2019 |
| Mechanisms of coexistence of a bacteria and a bacteriophage in a spatially homogeneous environment KA Lythgoe, L Chao Ecology Letters 6 (4), 326-334, 2003 | 60 | 2003 |
| Short-sighted virus evolution and a germline hypothesis for chronic viral infections KA Lythgoe, A Gardner, OG Pybus, J Grove Trends in microbiology 25 (5), 336-348, 2017 | 57 | 2017 |
| Early analysis of a potential link between viral load and the N501Y mutation in the SARS-COV-2 spike protein T Golubchik, KA Lythgoe, M Hall, L Ferretti, HR Fryer, G MacIntyre-Cockett, ... MedRxiv, 2021.01. 12.20249080, 2021 | 54 | 2021 |
