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Yongwook Choi
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Year
Predicting the Functional Effect of Amino Acid Substitutions and Indels
Y Choi, GE Sims, S Murphy, JR Miller, AP Chan
PloS one 7 (10), e46688, 2012
28172012
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Y Choi, AP Chan
Bioinformatics 31 (16), 2745-2747, 2015
19212015
A fast computation of pairwise sequence alignment scores between a protein and a set of single-locus variants of another protein
Y Choi
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
1482012
Comparison of phasing strategies for whole human genomes
Y Choi, AP Chan, E Kirkness, A Telenti, NJ Schork
PLoS genetics 14 (4), e1007308, 2018
1332018
Compression of graphical structures: Fundamental limits, algorithms, and experiments
Y Choi, W Szpankowski
IEEE Transactions on Information Theory 58 (2), 620-638, 2012
1172012
Compression of graphical structures
Y Choi, W Szpankowski
IEEE International Symposium on Information Theory, 364-368, 2009
117*2009
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
AP Chan, G Sutton, J DePew, R Krishnakumar, Y Choi, XZ Huang, E Beck, ...
Genome biology 16 (1), 1-28, 2015
1002015
Mechanism-of-action classification of antibiotics by global transcriptome profiling
A O’Rourke, S Beyhan, Y Choi, P Morales, AP Chan, JL Espinoza, ...
Antimicrobial agents and chemotherapy 64 (3), e01207-19, 2020
632020
Electrochemical detection of Pseudomonas in wound exudate samples from patients with chronic wounds
HJ Sismaet, A Banerjee, S McNish, Y Choi, M Torralba, S Lucas, A Chan, ...
Wound Repair and Regeneration 24 (2), 366-372, 2016
522016
Conserved genomic terminals of SARS-CoV-2 as coevolving functional elements and potential therapeutic targets
AP Chan, Y Choi, NJ Schork
MSphere 5 (6), e00754-20, 2020
352020
Co-occurrence of anaerobes in human chronic wounds
Y Choi, A Banerjee, S McNish, KS Couch, MG Torralba, S Lucas, ...
Microbial ecology 77 (3), 808-820, 2019
352019
Energy-optimal distributed algorithms for minimum spanning trees
Y Choi, M Khan, VSA Kumar, G Pandurangan
IEEE Journal on Selected Areas in Communications 27 (7), 1297-1304, 2009
342009
Energy-optimal distributed algorithms for minimum spanning trees
Y Choi, M Khan, VSA Kumar, G Pandurangan
Proceedings of the twentieth annual symposium on Parallelism in algorithms …, 2008
342008
Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome
CH Carlson, Y Choi, AP Chan, MJ Serapiglia, CD Town, LB Smart
Genome biology and evolution 9 (9), 2377-2394, 2017
302017
A maize database resource that captures tissue-specific and subcellular-localized gene expression, via fluorescent tags and confocal imaging (Maize Cell Genomics Database)
V Krishnakumar, Y Choi, E Beck, Q Wu, A Luo, A Sylvester, D Jackson, ...
Plant and Cell Physiology 56 (1), e12-e12, 2015
232015
Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells
AP Chan, Y Choi, LM Brinkac, R Krishnakumar, J DePew, M Kim, ...
Scientific reports 8 (1), 1-12, 2018
162018
AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates
AP Chan, Y Choi, TH Clarke, LM Brinkac, RC White, MR Jacobs, ...
Journal of Antimicrobial Chemotherapy 75 (10), 2760-2768, 2020
122020
Pattern matching in constrained sequences
Y Choi, W Szpankowski
2007 IEEE International Symposium on Information Theory, 2606-2610, 2007
122007
Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
JL Espinoza, CL Dupont, A O’Rourke, S Beyhan, P Morales, A Spoering, ...
PLOS Computational Biology 17 (3), e1008857, 2021
92021
Fast algorithm for optimal compression of graphs
Y Choi
2010 Proceedings of the Seventh Workshop on Analytic Algorithmics and …, 2010
62010
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Articles 1–20