Brian Cleary
Brian Cleary
Broad Fellow, Broad Institute
Verified email at - Homepage
Cited by
Cited by
Systematic mapping of functional enhancer–promoter connections with CRISPR interference
CP Fulco, M Munschauer, R Anyoha, G Munson, SR Grossman, EM Perez, ...
Science 354 (6313), 769-773, 2016
Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming
G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ...
Cell 176 (4), 928-943. e22, 2019
Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning
B Cleary, IL Brito, K Huang, D Gevers, T Shea, S Young, EJ Alm
Nature biotechnology 33 (10), 1053, 2015
Efficient Generation of Transcriptomic Profiles by Random Composite Measurements
B Cleary, L Cong, A Cheung, ES Lander, A Regev
Cell 171 (6), 1424-1436. e18, 2017
High resolution time series reveals cohesive but short-lived communities in coastal plankton
AM Martin-Platero, B Cleary, K Kauffman, SP Preheim, DJ McGillicuddy, ...
Nature communications 9 (1), 1-11, 2018
LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding
KU Ludwig, RM Schmithausen, D Li, ML Jacobs, R Hollstein, ...
Nature Biotechnology 39 (12), 1556-1562, 2021
Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings
B Cleary, JA Hay, B Blumenstiel, M Harden, M Cipicchio, J Bezney, ...
Science Translational Medicine, 2021
Multimodal pooled Perturb-CITE-seq screens in patient models define mechanisms of cancer immune evasion
CJ Frangieh, JC Melms, PI Thakore, KR Geiger-Schuller, P Ho, ...
Nature Genetics, 1-10, 2021
Compressed sensing for highly efficient imaging transcriptomics
B Cleary, B Simonton, J Bezney, E Murray, S Alam, A Sinha, E Habibi, ...
Nature Biotechnology, 1-7, 2021
The necessity and power of random, under-sampled experiments in biology
B Cleary, A Regev
arXiv preprint arXiv:2012.12961, 2020
Sparse Recovery Of Imaging Transcriptomics Data
JP Bryan, B Cleary, SL Farhi, YC Eldar
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 802-806, 2021
HYPER: Group testing via hypergraph factorization applied to COVID-19
D Hong, R Dey, X Lin, B Cleary, E Dobriban
medRxiv, 2021
Deep Unrolled Recovery in Sparse Biological Imaging
YB Sahel, JP Bryan, B Cleary, SL Farhi, YC Eldar
arXiv preprint arXiv:2109.14025, 2021
Harnessing Matrix Completion to Unify and Extend Viral Serology Studies
T Einav, B Cleary
bioRxiv, 2021
Leveraging latent patterns in the study of living systems
BBL Cleary
Massachusetts Institute of Technology, 2019
Principles of Systems Biology, No. 24
B Cleary, A Regev
CELL SYSTEMS 5 (6), 534-537, 2017
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