Alba Cristina Magalhaes Alves de Melo
Alba Cristina Magalhaes Alves de Melo
Professor at the Department of Computer Science - University of Brasilia
Verified email at cic.unb.br
Title
Cited by
Cited by
Year
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences
EFO Sandes, ACMA de Melo
Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 2010
782010
Retrieving smith-waterman alignments with optimizations for megabase biological sequences using GPU
EFO Sandes, ACMA de Melo
IEEE Transactions on Parallel and Distributed Systems 24 (5), 1009-1021, 2012
742012
Smith-waterman alignment of huge sequences with gpu in linear space
EFO Sandes, ACMA de Melo
2011 IEEE International Parallel & Distributed Processing Symposium, 1199-1211, 2011
602011
A parallel strategy for biological sequence alignment in restricted memory space
RB Batista, A Boukerche, ACMA de Melo
Journal of Parallel and Distributed Computing 68 (4), 548-561, 2008
522008
A hardware accelerator for the fast retrieval of DIALIGN biological sequence alignments in linear space
A Boukerche, JM Correa, ACM Melo, RP Jacobi
IEEE Transactions on Computers 59 (6), 808-821, 2010
452010
CUDAlign 4.0: Incremental speculative traceback for exact chromosome-wide alignment in GPU clusters
EF de Oliveira Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ...
IEEE Transactions on Parallel and Distributed Systems 27 (10), 2838-2850, 2016
422016
Parallel strategies for local biological sequence alignment in a cluster of workstations
A Boukerche, ACMA de Melo, M Ayala-Rincón
19th IEEE International Parallel and Distributed Processing Symposium, 8 pp., 2005
362005
An extensible resource discovery mechanism for grid computing environments
TG Ramos, ACMA de Melo
Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGRID …, 2006
342006
CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters
FO Edans, G Miranda, ACMA de Melo, X Martorell, E Ayguadé
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
322014
Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method
AF Leite, V Alves, R G. N., T C., E C., ACMA Melo
IEEE Society, 2015
312015
Parallel smith-waterman comparison on multicore and manycore computing platforms with BSP++
K Hamidouche, FM Mendonca, J Falcou, ACMA de Melo, D Etiemble
International Journal of Parallel Programming 41 (1), 111-136, 2013
272013
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment
D Sundfeld, JH Havgaard, ACMA de Melo, J Gorodkin
Bioinformatics 32 (8), 1238-1240, 2016
242016
Parallel optimal pairwise biological sequence comparison: Algorithms, platforms, and classification
EFDO Sandes, A Boukerche, ACMAD Melo
ACM Computing Surveys (CSUR) 48 (4), 1-36, 2016
242016
An exact parallel algorithm to compare very long biological sequences in clusters of workstations
A Boukerche, ACMA de Melo, EF de Oliveira Sandes, M Ayala-Rincon
Cluster Computing 10 (2), 187-202, 2007
242007
Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines
G Teodoro, TM Kurç, LFR Taveira, ACMA Melo, Y Gao, J Kong, JH Saltz
Bioinformatics 33 (7), 1064-1072, 2017
222017
Comparing two long biological sequences using a dsm system
RCF Melo, MET Walter, ACMA Melo, R Batista, M Nardelli, T Martins, ...
European Conference on Parallel Processing, 517-524, 2003
212003
Statistical analysis of Amazon EC2 cloud pricing models
G Portella, GN Rodrigues, E Nakano, ACMA Melo
Concurrency and Computation: Practice and Experience 31 (18), e4451, 2019
202019
MASA: a multiplatform architecture for sequence aligners with block pruning
EF De O. Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ...
ACM Transactions on Parallel Computing (TOPC) 2 (4), 1-31, 2016
202016
Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework
ACMAM Melo
HICSS-32 - Proceedings of the 32nd Annual Hawaii International Conference …, 1999
201999
Hybrid MPI/OpenMP strategy for biological multiple sequence alignment with DIALIGN-TX in heterogeneous multicore clusters
E de Araujo Macedo, ACMA de Melo, GH Pfitscher, A Boukerche
2011 IEEE International Symposium on Parallel and Distributed Processing …, 2011
192011
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