Vasanth Singan
Vasanth Singan
Bioinformatics Scientist, Ambry Genetics
Verified email at
Cited by
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Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica
DW Udwary, L Zeigler, RN Asolkar, V Singan, A Lapidus, W Fenical, ...
Proceedings of the National Academy of Sciences 104 (25), 10376-10381, 2007
Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells
C Stadler, E Rexhepaj, VR Singan, RF Murphy, R Pepperkok, M UhlÚn, ...
Nature methods 10 (4), 315-323, 2013
Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway
JC Simpson, B Joggerst, V Laketa, F Verissimo, C Cetin, H Erfle, ...
Nature cell biology 14 (7), 764-774, 2012
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
C Gao, L Montoya, L Xu, M Madera, J Hollingsworth, E Purdom, V Singan, ...
Nature Communications 11 (1), 34, 2020
wFleaBase: the Daphnia genome database
JK Colbourne, VR Singan, DG Gilbert
BMC bioinformatics 6, 1-5, 2005
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
JT Lovell, AH MacQueen, S Mamidi, J Bonnette, J Jenkins, JD Napier, ...
Nature 590 (7846), 438-444, 2021
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
N Varoquaux, B Cole, C Gao, G Pierroz, CR Baker, D Patel, M Madera, ...
Proceedings of the National Academy of Sciences 116 (52), 27124-27132, 2019
Fungal and plant gene expression in the Tulasnella calosporaSerapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
V Fochi, W Chitarra, A Kohler, S Voyron, VR Singan, EA Lindquist, ...
New Phytologist 213 (1), 365-379, 2017
Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses
B Schwessinger, O Bahar, N Thomas, N Holton, V Nekrasov, D Ruan, ...
PLoS pathogens 11 (3), e1004809, 2015
Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT 2 in caffeoylquinic acid biosynthesis and its regulation by defenseá…
J Zhang, Y Yang, K Zheng, M Xie, K Feng, SS Jawdy, LE Gunter, ...
New Phytologist 220 (2), 502-516, 2018
Insights of biomass recalcitrance in natural Populus trichocarpa variants for biomass conversion
CG Yoo, Y Yang, Y Pu, X Meng, W Muchero, KL Yee, OA Thompson, ...
Green Chemistry 19 (22), 5467-5478, 2017
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
C Gao, L Xu, L Montoya, M Madera, J Hollingsworth, L Chen, E Purdom, ...
Nature communications 13 (1), 3867, 2022
Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
D Warshan, JL Espinoza, RK Stuart, RA Richter, SY Kim, N Shapiro, ...
The ISME journal 11 (12), 2821-2833, 2017
Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
W Muchero, KL Sondreli, JG Chen, BR Urbanowicz, J Zhang, V Singan, ...
Proceedings of the National Academy of Sciences 115 (45), 11573-11578, 2018
Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
D Banerjee, T Eng, AK Lau, Y Sasaki, B Wang, Y Chen, JP Prahl, ...
Nature communications 11 (1), 5385, 2020
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
SP Gordon, B Contreras-Moreira, JJ Levy, A Djamei, A Czedik-Eysenberg, ...
Nature Communications 11 (1), 3670, 2020
The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis
J Wong-Bajracharya, VR Singan, R Monti, KL Plett, V Ng, IV Grigoriev, ...
Proceedings of the National Academy of Sciences 119 (3), e2103527119, 2022
The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
VW Wu, N Thieme, LB Huberman, A Dietschmann, DJ Kowbel, J Lee, ...
Proceedings of the National Academy of Sciences 117 (11), 6003-6013, 2020
A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus
M Xie, W Muchero, AC Bryan, K Yee, HB Guo, J Zhang, TJ Tschaplinski, ...
The Plant Cell 30 (7), 1645-1660, 2018
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism
Y Xiong, VW Wu, A Lubbe, L Qin, S Deng, M Kennedy, D Bauer, ...
PLoS genetics 13 (5), e1006737, 2017
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