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Vasanth Singan
Vasanth Singan
Bioinformatics Scientist, Ambry Genetics
Verified email at ambrygen.com
Title
Cited by
Cited by
Year
Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica
DW Udwary, L Zeigler, RN Asolkar, V Singan, A Lapidus, W Fenical, ...
Proceedings of the National Academy of Sciences 104 (25), 10376-10381, 2007
6572007
Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells
C Stadler, E Rexhepaj, VR Singan, RF Murphy, R Pepperkok, M UhlÚn, ...
Nature methods 10 (4), 315-323, 2013
2762013
Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway
JC Simpson, B Joggerst, V Laketa, F Verissimo, C Cetin, H Erfle, ...
Nature cell biology 14 (7), 764-774, 2012
2222012
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
C Gao, L Montoya, L Xu, M Madera, J Hollingsworth, E Purdom, V Singan, ...
Nature Communications 11 (1), 34, 2020
2102020
wFleaBase: the Daphnia genome database
JK Colbourne, VR Singan, DG Gilbert
BMC bioinformatics 6, 1-5, 2005
1692005
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
JT Lovell, AH MacQueen, S Mamidi, J Bonnette, J Jenkins, JD Napier, ...
Nature 590 (7846), 438-444, 2021
1592021
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
N Varoquaux, B Cole, C Gao, G Pierroz, CR Baker, D Patel, M Madera, ...
Proceedings of the National Academy of Sciences 116 (52), 27124-27132, 2019
1472019
Fungal and plant gene expression in the Tulasnella calosporaSerapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
V Fochi, W Chitarra, A Kohler, S Voyron, VR Singan, EA Lindquist, ...
New Phytologist 213 (1), 365-379, 2017
1432017
Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses
B Schwessinger, O Bahar, N Thomas, N Holton, V Nekrasov, D Ruan, ...
PLoS pathogens 11 (3), e1004809, 2015
1262015
Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT 2 in caffeoylquinic acid biosynthesis and its regulation by defenseá…
J Zhang, Y Yang, K Zheng, M Xie, K Feng, SS Jawdy, LE Gunter, ...
New Phytologist 220 (2), 502-516, 2018
1232018
Insights of biomass recalcitrance in natural Populus trichocarpa variants for biomass conversion
CG Yoo, Y Yang, Y Pu, X Meng, W Muchero, KL Yee, OA Thompson, ...
Green Chemistry 19 (22), 5467-5478, 2017
932017
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
C Gao, L Xu, L Montoya, M Madera, J Hollingsworth, L Chen, E Purdom, ...
Nature communications 13 (1), 3867, 2022
902022
Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
D Warshan, JL Espinoza, RK Stuart, RA Richter, SY Kim, N Shapiro, ...
The ISME journal 11 (12), 2821-2833, 2017
782017
Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
W Muchero, KL Sondreli, JG Chen, BR Urbanowicz, J Zhang, V Singan, ...
Proceedings of the National Academy of Sciences 115 (45), 11573-11578, 2018
752018
Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
D Banerjee, T Eng, AK Lau, Y Sasaki, B Wang, Y Chen, JP Prahl, ...
Nature communications 11 (1), 5385, 2020
732020
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
SP Gordon, B Contreras-Moreira, JJ Levy, A Djamei, A Czedik-Eysenberg, ...
Nature Communications 11 (1), 3670, 2020
722020
The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis
J Wong-Bajracharya, VR Singan, R Monti, KL Plett, V Ng, IV Grigoriev, ...
Proceedings of the National Academy of Sciences 119 (3), e2103527119, 2022
712022
The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
VW Wu, N Thieme, LB Huberman, A Dietschmann, DJ Kowbel, J Lee, ...
Proceedings of the National Academy of Sciences 117 (11), 6003-6013, 2020
662020
A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus
M Xie, W Muchero, AC Bryan, K Yee, HB Guo, J Zhang, TJ Tschaplinski, ...
The Plant Cell 30 (7), 1645-1660, 2018
602018
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism
Y Xiong, VW Wu, A Lubbe, L Qin, S Deng, M Kennedy, D Bauer, ...
PLoS genetics 13 (5), e1006737, 2017
572017
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