Marco Antoniotti

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Bud MishraProfessor of Computer Science and MathematicsVerified email at nyu.edu
Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor emeritus of Computer Science - University of Milano-BicoccaVerified email at unimib.it
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, SpainVerified email at cnag.crg.eu
Alberto PolicritiUniversity of UdineVerified email at uniud.it
Luca De SanoUniversità degli Studi di Milano BicoccaVerified email at campus.unimib.it
Rocco PiazzaUniversity of Milano-BicoccaVerified email at unimib.it
Naren RamakrishnanThomas L. Phillips Professor, Virginia TechVerified email at cs.vt.edu
Chiara DamianiDepartment of Biotechnology and BiosciencesVerified email at unimib.it
Italo ZoppisDipartimento di Informatica, Sistemistica e Comunicazione, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Carla PiazzaProfessor of Computer Science, University of UdineVerified email at uniud.it
Loes Olde LoohuisAssistant professor at UCLAVerified email at mednet.ucla.edu
De Matteis GiovanniDepartment of Mathematics and Information Sciences, Northumbria University, NewcastleVerified email at unipv.it
Daniele MericoVevo Tx / TCAG (SickKids)Verified email at vevo.ai
Isabella CastiglioniResearcher, IBFM CNRVerified email at ibfm.cnr.it
Claudia CavaIBFM-CNRVerified email at ibfm.cnr.it
Marzia Di FilippoUniversity of Milano-BicoccaVerified email at unimib.it
Marco S. NobileAssociate Professor, Ca' Foscari University of VeniceVerified email at unive.it

Marco Antoniotti

Professor of Computer Science, Università degli Studi di Milano-Bicocca

Verified email at unimib.it - Homepage

Computational Biology Bioinformatics Computer Science Machine Learning


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SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular Systems Biology 16 (8), e9110, 2020	252	2020
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018	159	2018
Model building and model checking for biochemical processes M Antoniotti, A Policriti, N Ugel, B Mishra Cell biochemistry and biophysics 38, 271-286, 2003	143	2003
Discrete event models+ temporal logic= supervisory controller: Automatic synthesis of locomotion controllers M Antoniotti, B Mishra Proceedings of 1995 IEEE International Conference on Robotics and Automation …, 1995	106	1995
CAPRI: efficient inference of cancer progression models from cross-sectional data D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ... Bioinformatics 31 (18), 3016-3026, 2015	105	2015
Algorithmic algebraic model checking I: Challenges from systems biology C Piazza, M Antoniotti, V Mysore, A Policriti, F Winkler, B Mishra International Conference on Computer Aided Verification, 5-19, 2005	97	2005
Algorithmic methods to infer the evolutionary trajectories in cancer progression G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ... PNAS 113 (28), E4025-E4034, 2016	95	2016
From bytes to bedside: data integration and computational biology for translational cancer research JP Mathew, BS Taylor, GD Bader, S Pyarajan, M Antoniotti, ... PLoS computational biology 3 (2), e12, 2007	87	2007
Inferring Tree Causal Models of Cancer Progression with Probability Raising L Olde Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ... PLoS ONE, 2014	76	2014
A comparison of machine learning techniques for survival prediction in breast cancer L Vanneschi, A Farinaccio, G Mauri, M Antoniotti, P Provero, M Giacobini BioData mining 4, 1-13, 2011	65	2011
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development G De Matteis, A Graudenzi, M Antoniotti Journal of mathematical biology 66 (7), 1409-1462, 2013	62	2013
A review of computational strategies for denoising and imputation of single-cell transcriptomic data L Patruno, D Maspero, F Craighero, F Angaroni, M Antoniotti, A Graudenzi Briefings in Bioinformatics, 2020	58	2020
Foundations of a query and simulation system for the modeling of biochemical and biological processes M Antoniotti, F Park, A Policriti, N Ugel, B Mishra Biocomputing 2003, 116-127, 2002	58	2002
Taming the complexity of biochemical models through bisimulation and collapsing: theory and practice M Antoniotti, C Piazza, A Policriti, M Simeoni, B Mishra Theoretical Computer Science 325 (1), 45-67, 2004	52	2004
Synthesis and verification of discrete controllers for robotics and manufacturing devices with temporal logic and the Control-D system M Antoniotti New York University, 1995	50	1995
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ... biorxiv.org, 2015	48	2015
SHIFT and SMART-AHS: A Language for Hybrid System Engineering Modeling and Simulation. M Antoniotti, A Göllü DSL 97, 14-14, 1997	48	1997
Microsimulation analysis of automated vehicles on multiple merge junction highways M Antoniotti, A Deshpande, A Girault 1997 IEEE International Conference on Systems, Man, and Cybernetics …, 1997	44	1997
System and process for validating, aligning and reordering one or more genetic sequence maps using at least one ordered restriction map M Antoniotti, B Mishra, T Anantharaman, S Paxia, DC Schwartz US Patent 7,831,392, 2010	43	2010
Method, system and software arrangement for reconstructing formal descriptive models of processes from functional/modal data using suitable ontology B Mishra, M Antoniotti, N Ramakrishnan US Patent 7,801,841, 2010	41	2010

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