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Jason E Stajich
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Reconstructing the early evolution of Fungi using a six-gene phylogeny
TY James, F Kauff, CL Schoch, PB Matheny, V Hofstetter, CJ Cox, G Celio, ...
Nature 443 (7113), 818-822, 2006
21182006
The Bioperl toolkit: Perl modules for the life sciences
JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ...
Genome research 12 (10), 1611-1618, 2002
19672002
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
J Kämper, R Kahmann, M Bölker, LJ Ma, T Brefort, BJ Saville, F Banuett, ...
Nature 444 (7115), 97-101, 2006
13542006
The generic genome browser: a building block for a model organism system database
LD Stein, C Mungall, SQ Shu, M Caudy, M Mangone, A Day, E Nickerson, ...
Genome research 12 (10), 1599-1610, 2002
13522002
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
JW Spatafora, Y Chang, GL Benny, K Lazarus, ME Smith, ML Berbee, ...
Mycologia 108 (5), 1028-1046, 2016
12402016
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
F Martin, A Aerts, D Ahrén, A Brun, EGJ Danchin, F Duchaussoy, J Gibon, ...
Nature 452 (7183), 88-92, 2008
11172008
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
LD Stein, Z Bao, D Blasiar, T Blumenthal, MR Brent, N Chen, A Chinwalla, ...
PLoS biology 1 (2), e45, 2003
11112003
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
DA Fitzpatrick, ME Logue, JE Stajich, G Butler
BMC evolutionary biology 6 (1), 99, 2006
6192006
Genome sequence of the model mushroom Schizophyllum commune
RA Ohm, JF De Jong, LG Lugones, A Aerts, E Kothe, JE Stajich, ...
Nature biotechnology 28 (9), 957-963, 2010
6182010
Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak
JA Fraser, SS Giles, EC Wenink, SG Geunes-Boyer, JR Wright, ...
Nature 437 (7063), 1360-1364, 2005
6132005
Ganglioside-induced differentiation-associated protein-1 is mutant in Charcot-Marie-Tooth disease type 4A/8q21
RV Baxter, KB Othmane, JM Rochelle, JE Stajich, C Hulette, ...
Nature genetics 30 (1), 21, 2002
548*2002
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
JE Stajich, SK Wilke, D Ahrén, CH Au, BW Birren, M Borodovsky, C Burns, ...
Proceedings of the National Academy of Sciences 107 (26), 11889-11894, 2010
4862010
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ...
Genome biology 11 (7), R73, 2010
4222010
The fungi
JE Stajich, ML Berbee, M Blackwell, DS Hibbett, TY James, JW Spatafora, ...
Current Biology 19 (18), R840-R845, 2009
4102009
Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation
G Janbon, KL Ormerod, D Paulet, EJ Byrnes III, V Yadav, G Chatterjee, ...
PLoS genetics 10 (4), e1004261, 2014
3852014
The evolution of mammalian gene families
JP Demuth, TD Bie, JE Stajich, N Cristianini, MW Hahn
PloS one 1 (1), e85, 2006
3762006
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
TJ Sharpton, JE Stajich, SD Rounsley, MJ Gardner, JR Wortman, ...
Genome Research 19 (10), 1722-1731, 2009
3552009
FungiDB: an integrated functional genomics database for fungi
JE Stajich, T Harris, BP Brunk, J Brestelli, S Fischer, OS Harb, ...
Nucleic acids research 40 (D1), D675-D681, 2012
3482012
Shared signatures of parasitism and phylogenomics unite cryptomycota and microsporidia
TY James, A Pelin, L Bonen, S Ahrendt, D Sain, N Corradi, JE Stajich
Current Biology 23 (16), 1548-1553, 2013
3442013
Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data
EB Rosenblum, TY James, KR Zamudio, TJ Poorten, D Ilut, D Rodriguez, ...
Proceedings of the National Academy of Sciences 110 (23), 9385-9390, 2013
3232013
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