| ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees C Zhang, M Rabiee, E Sayyari, S Mirarab BMC bioinformatics 19, 15-30, 2018 | 1577 | 2018 |
| ASTRAL-III: increased scalability and impacts of contracting low support branches C Zhang, E Sayyari, S Mirarab RECOMB international workshop on comparative genomics, 53-75, 2017 | 215 | 2017 |
| ASTRAL-Pro: quartet-based species-tree inference despite paralogy C Zhang, C Scornavacca, EK Molloy, S Mirarab Molecular biology and evolution 37 (11), 3292-3307, 2020 | 142 | 2020 |
| ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization J Yin, C Zhang, S Mirarab Bioinformatics 35 (20), 3961-3969, 2019 | 63 | 2019 |
| AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications J Luebeck, C Coruh, SR Dehkordi, JT Lange, KM Turner, V Deshpande, ... Nature communications 11 (1), 4374, 2020 | 59 | 2020 |
| Mass spectrometry-based visualization of molecules associated with human habitats D Petras, LF Nothias, RA Quinn, T Alexandrov, N Bandeira, A Bouslimani, ... Analytical chemistry 88 (22), 10775-10784, 2016 | 51 | 2016 |
| Weighting by gene tree uncertainty improves accuracy of quartet-based species trees C Zhang, S Mirarab Molecular Biology and Evolution 39 (12), msac215, 2022 | 35 | 2022 |
| A fast and flexible framework for network-assisted genomic association DE Carlin, SH Fong, Y Qin, T Jia, JK Huang, B Bao, C Zhang, T Ideker Iscience 16, 155-161, 2019 | 26 | 2019 |
| TAPER: Pinpointing errors in multiple sequence alignments despite varying rates of evolution C Zhang, Y Zhao, EL Braun, S Mirarab Methods in Ecology and Evolution 12 (11), 2145-2158, 2021 | 18 | 2021 |
| ASTRAL-Pro 2: ultrafast species tree reconstruction from multi-copy gene family trees C Zhang, S Mirarab Bioinformatics 38 (21), 4949-4950, 2022 | 13 | 2022 |
| A scalable model for simulating multi-round antibody evolution and benchmarking of clonal tree reconstruction methods C Zhang, AV Bzikadze, Y Safonova, S Mirarab Frontiers in immunology 13, 1014439, 2022 | 7* | 2022 |
| Phylogenomic branch length estimation using quartets Y Tabatabaee, C Zhang, T Warnow, S Mirarab Bioinformatics 39 (Supplement_1), i185-i193, 2023 | 2 | 2023 |
| CASTER: Direct species tree inference from whole-genome alignments C Zhang, R Nielsen, S Mirarab bioRxiv, 2023.10. 04.560884, 2023 | | 2023 |
Siavash MirarabUniversity of California at San DiegoVerified email at ucsd.edu
