Diogo Pratas
Title
Cited by
Cited by
Year
GReEn: a tool for efficient compression of genome resequencing data
AJ Pinho, D Pratas, SP Garcia
Nucleic Acids Research 40 (4), e27-e27, 2012
1182012
MFCompress: a compression tool for FASTA and multi-FASTA data
AJ Pinho, D Pratas
Bioinformatics 30 (1), 117-118, 2014
832014
A Survey on Data Compression Methods for Biological Sequences
M Hosseini, D Pratas, AJ Pinho
Information 7 (4), 56, 2016
622016
Bacteria DNA sequence compression using a mixture of finite-context models
AJ Pinho, D Pratas, PJSG Ferreira
2011 IEEE Statistical Signal Processing Workshop (SSP), 125-128, 2011
482011
Efficient compression of genomic sequences
D Pratas, AJ Pinho, PJSG Ferreira
2016 Data Compression Conference (DCC), 231-240, 2016
462016
Three minimal sequences found in Ebola virus genomes and absent from human DNA
RM Silva, D Pratas, L Castro, AJ Pinho, PJSG Ferreira
Bioinformatics 31 (15), 2421-2425, 2015
402015
An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
D Pratas, RM Silva, AJ Pinho, PJSG Ferreira
Scientific reports 5 (1), 1-9, 2015
272015
XS: a FASTQ read simulator
D Pratas, AJ Pinho, JMOS Rodrigues
BMC research notes 7 (1), 1-7, 2014
262014
Compressing the human genome using exclusively Markov models
D Pratas, A Pinho
5th International Conference on Practical Applications of Computational …, 2011
222011
Substitutional tolerant Markov models for relative compression of DNA sequences
D Pratas, M Hosseini, AJ Pinho
International Conference on Practical Applications of Computational Biology …, 2017
172017
Authorship attribution using relative compression
AJ Pinho, D Pratas, PJSG Ferreira
2016 Data Compression Conference (DCC), 329-338, 2016
142016
A compression model for DNA multiple sequence alignment blocks
LMO Matos, D Pratas, AJ Pinho
IEEE Transactions on Information Theory 59 (5), 3189-3198, 2013
142013
A compression model for DNA multiple sequence alignment blocks
LMO Matos, D Pratas, AJ Pinho
IEEE Transactions on Information Theory 59 (5), 3189-3198, 2013
142013
DNA sequences at a glance
AJ Pinho, SP Garcia, D Pratas, PJSG Ferreira
PloS one 8 (11), e79922, 2013
132013
Cryfa: a secure encryption tool for genomic data
M Hosseini, D Pratas, AJ Pinho
Bioinformatics 35 (1), 146-148, 2019
122019
A genomic distance for assembly comparison based on compressed maximal exact matches
SP Garcia, JMOS Rodrigues, S Santos, D Pratas, V Afreixo, CAC Bastos, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1, 2013
122013
GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences
D Pratas, M Hosseini, AJ Pinho
International Conference on Practical Applications of Computational Biology …, 2019
102019
Exploring deep Markov models in genomic data compression using sequence pre-analysis
D Pratas, AJ Pinho
2014 22nd European Signal Processing Conference (EUSIPCO), 2395-2399, 2014
102014
A conditional compression distance that unveils insights of the genomic evolution
D Pratas, AJ Pinho
arXiv preprint arXiv:1401.4134, 2014
102014
On the Approximation of the Kolmogorov Complexity for DNA Sequences
D Pratas, AJ Pinho
Iberian Conference on Pattern Recognition and Image Analysis, 259-266, 2017
92017
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Articles 1–20