Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks P Saa, L Nielsen Biotechnology Advances, 2017 | 135 | 2017 |
A multi-tissue genome-scale metabolic modeling framework for the analysis of whole plant systems C Gomes de Oliveira Dal'Molin, LE Quek, PA Saa, LK Nielsen Frontiers in plant science 6, 111599, 2015 | 110 | 2015 |
Construction of feasible and accurate kinetic models of metabolism: A Bayesian approach PA Saa, LK Nielsen Scientific Reports 6, 29635, 2016 | 77 | 2016 |
ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks PA Saa, LK Nielsen Bioinformatics 32 (15), 2330-2337, 2016 | 47 | 2016 |
A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions P Saa, L Nielsen PLOS Computational Biology 11 (4), 2015 | 37 | 2015 |
Effective dissolved oxygen control strategy for high-cell-density cultures M Cárcamo, P Saa, J Torres, S Torres, P Mandujano, JRP Correa, ... IEEE Latin America Transactions 12 (3), 389-394, 2014 | 35 | 2014 |
Modeling oxygen dissolution and biological uptake during pulse oxygen additions in oenological fermentations PA Saa, MI Moenne, JR Pérez-Correa, E Agosin Bioprocess and biosystems engineering 35, 1167-1178, 2012 | 32 | 2012 |
Modeling Approaches for Probing Cross-Feeding Interactions in the Human Gut Microbiome PA Saa, A Urrutia, C Silva-Andrade, AJ Martín, D Garrido Computational and Structural Biotechnology Journal 20, 79-89, 2021 | 29 | 2021 |
Build Your Bioprocess on a Solid Strain—β-Carotene Production in Recombinant Saccharomyces cerevisiae J López, VF Cataldo, M Peña, PA Saa, F Saitua, M Ibaceta, E Agosin Frontiers in bioengineering and biotechnology 7, 171, 2019 | 29 | 2019 |
Oxygen incorporation and dissolution during industrial-scale red wine fermentations MI Moenne, P Saa, VF Laurie, JR Pérez-Correa, E Agosin Food and bioprocess technology 7, 2627-2636, 2014 | 28 | 2014 |
Engineering Saccharomyces cerevisiae for the Overproduction of β-Ionone and Its Precursor β-Carotene J López, D Bustos, C Camilo, N Arenas, PA Saa, E Agosin Frontiers in Bioengineering and Biotechnology 8, 578793, 2020 | 27 | 2020 |
Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models PA Saa, LK Nielsen Bioinformatics 32 (24), 3807-3814, 2016 | 23 | 2016 |
Inferring composition and function of the human gut microbiome in time and space: A review of genome-scale metabolic modelling tools Á Altamirano, PA Saa, D Garrido Computational and Structural Biotechnology Journal 18, 2020 | 21 | 2020 |
Contextualized genome-scale model unveils high-order metabolic effects of the specific growth rate and oxygenation level in recombinant Pichia pastoris P Torres, PA Saa, J Albiol, P Ferrer, E Agosin Metabolic Engineering Communications, e00103, 2019 | 20 | 2019 |
Improved calibration of a solid substrate fermentation model J Sacher, P Saa, M Cárcamo, J López, CA Gelmi, R Pérez-Correa Electronic Journal of Biotechnology 14 (5), 7-7, 2011 | 18 | 2011 |
A robust hybrid observer for monitoring high-cell density cultures exhibiting overflow metabolism L Bárzaga-Martell, M Duarte-Mermoud, F Ibáñez-Espinel, ... Journal of Process Control 104, 112-125, 2021 | 14 | 2021 |
Metabolic Modeling and Bidirectional Culturing of Two Gut Microbes Reveal Cross-Feeding Interactions and Protective Effects on Intestinal Cells B Hirmas, N Gasaly, G Orellana, M Vega-Sagardía, P Saa, M Gotteland, ... mSystems, e00646-22, 2022 | 13 | 2022 |
Expanding metabolic capabilities using novel pathway designs: computational tools and case studies PA Saa, MP Cortés, J López, D Bustos, A Maass, E Agosin Biotechnology Journal, 2019 | 12 | 2019 |
Impact of carbon dioxide injection on oxygen dissolution rate during oxygen additions in a bubble column PA Saa, JR Pérez-Correa, D Celentano, E Agosin Chemical engineering journal 232, 157-166, 2013 | 12 | 2013 |
From reconstruction to C4 metabolic engineering: a case study for overproduction of polyhydroxybutyrate in bioenergy grasses C Gomes de Oliveira Dal'Molin, LE Quek, PA Saa, LK Nielsen Plant Science, 2018 | 9 | 2018 |