| GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ... Genome research 28 (9), 1395-1404, 2018 | 631 | 2018 |
| Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach A Francisco, M Bugalho, M Ramirez, J Carriço BMC bioinformatics 10 (1), 152, 2009 | 614 | 2009 |
| PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço BMC bioinformatics 13, 1-10, 2012 | 560 | 2012 |
| Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes JA Carrico, C Silva-Costa, J Melo-Cristino, FR Pinto, H De Lencastre, ... Journal of clinical microbiology 44 (7), 2524-2532, 2006 | 373 | 2006 |
| PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods M Nascimento, A Sousa, M Ramirez, AP Francisco, JA Carriço, C Vaz Bioinformatics 33 (1), 128-129, 2017 | 346 | 2017 |
| Analysis of genomic sequences by Chaos Game Representation JS Almeida, JA Carrico, A Maretzek, PA Noble, M Fletcher Bioinformatics 17 (5), 429-437, 2001 | 292 | 2001 |
| chewBBACA: A complete suite for gene-by-gene schema creation and strain identification M Silva, MP Machado, DN Silva, M Rossi, J Moran-Gilad, S Santos, ... Microbial genomics 4 (3), e000166, 2018 | 277 | 2018 |
| Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains NA Faria, JA Carrico, DC Oliveira, M Ramirez, H de Lencastre Journal of clinical microbiology 46 (1), 136, 2008 | 185 | 2008 |
| Adjusted Wallace coefficient as a measure of congruence between typing methods A Severiano, FR Pinto, M Ramirez, JA Carriço Journal of clinical microbiology 49 (11), 3997-4000, 2011 | 183 | 2011 |
| PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees B Ribeiro-Gonçalves, AP Francisco, C Vaz, M Ramirez, JA Carriço Nucleic acids research 44 (W1), W246-W251, 2016 | 157 | 2016 |
| Assessment of band-based similarity coefficients for automatic type and subtype classification of microbial isolates analyzed by pulsed-field gel electrophoresis JA Carrico, FR Pinto, C Simas, S Nunes, NG Sousa, N Frazao, ... Journal of clinical microbiology 43 (11), 5483, 2005 | 151 | 2005 |
| Effect of the seven-valent conjugate pneumococcal vaccine on carriage and drug resistance of Streptococcus pneumoniae in healthy children attending day-care centers in Lisbon N Frazão, A Brito-Avô, C Simas, J Saldanha, R Mato, S Nunes, NG Sousa, ... The Pediatric infectious disease journal 24 (3), 243, 2005 | 148 | 2005 |
| High Rates of Transmission of and Colonization by Streptococcus pneumoniae and Haemophilus influenzae within a Day Care Center Revealed in a Longitudinal … R Sá-Leao, S Nunes, A Brito-Avô, CR Alves, JA Carriço, J Saldanha, ... Journal of Clinical Microbiology 46 (1), 225-234, 2008 | 145 | 2008 |
| Molecular characterization of methicillin-resistant Staphylococcus epidermidis clones: evidence of geographic dissemination M Miragaia, I Couto, SFF Pereira, KG Kristinsson, H Westh, JO Jarlov, ... Journal of clinical microbiology 40 (2), 430, 2002 | 145 | 2002 |
| Comparison of Molecular Typing Methods for Characterization of Staphylococcus epidermidis: Proposal for Clone Definition M Miragaia, JA Carrico, JC Thomas, I Couto, MC Enright, H De Lencastre Journal of Clinical Microbiology 46 (1), 118-129, 2008 | 140 | 2008 |
| Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones … R Sá-Leao, F Pinto, S Aguiar, S Nunes, JA Carriço, N Frazao, ... Journal of clinical microbiology 49 (4), 1369-1375, 2011 | 120 | 2011 |
| Trends in drug resistance, serotypes, and molecular types of Streptococcus pneumoniae colonizing preschool-age children attending day care centers in Lisbon, Portugal: a … S Nunes, R Sa-Leao, J Carriço, CR Alves, R Mato, AB Avô, J Saldanha, ... Journal of clinical microbiology 43 (3), 1285, 2005 | 96 | 2005 |
| Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution JA Carriço, AJ Sabat, AW Friedrich, M Ramirez, ... Eurosurveillance 18 (4), 2013 | 89 | 2013 |
| Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures A Severiano, JA Carriço, DA Robinson, M Ramirez, FR Pinto PLoS One 6 (5), e19539, 2011 | 85 | 2011 |
| INNUENDO: a cross‐sectoral platform for the integration of genomics in the surveillance of food‐borne pathogens AK Llarena, BF Ribeiro‐Gonçalves, D Nuno Silva, J Halkilahti, ... EFSA Supporting Publications 15 (11), 1498E, 2018 | 82 | 2018 |
Mario RamirezProfessor of Microbiology, Faculdade de Medicina, Universidade de Lisboa, PortugalE-mail confirmado em fm.ul.pt
