Miguel Rocha

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Isabel RochaITQB NOVA - Universidade NOVA de LisboaEmail confirmado em itqb.unl.pt
Eugénio Campos FerreiraProfessor of Biological Engineering, Universidade do MinhoEmail confirmado em deb.uminho.pt
Paulo CortezFull Professor, ALGORITMI/Dep. Information Systems, University of MinhoEmail confirmado em dsi.uminho.pt
Paulo MaiaSilicoLife SAEmail confirmado em silicolife.com
Jose Carlos Ferreira Maia NevesProfessor of Computer Science, The University of MinhoEmail confirmado em di.uminho.pt
Marcelo MaraschinUniversidade Federal de Santa CatarinaEmail confirmado em ufsc.br
Miguel RioProfessor of Computer NetworksEmail confirmado em ucl.ac.uk
Oscar DiasUniversity of MinhoEmail confirmado em deb.uminho.pt
Florentino Fdez-RiverolaProfessor, Computer Science Department, University of VigoEmail confirmado em uvigo.es
Rui MendesAlgoritmi, DI, Universidade do MinhoEmail confirmado em di.uminho.pt
Virgilio Gavicho UarrotaPONTIFICIA UNIVERSIDAD CATOLICA DE VALPARAISOEmail confirmado em posgrad.ufsc.br
Julio Saez RodriguezHeidelberg UniversityEmail confirmado em bioquant.uni-heidelberg.de
Kiran Raosaheb PatilMRC Toxicology Unit, University of CambridgeEmail confirmado em cam.ac.uk
José P. FariaAssistant Computational BiologistEmail confirmado em anl.gov
Bruno M. CostaLife and Health Sciences Research Institute (ICVS), School of Medicine, University of MinhoEmail confirmado em med.uminho.pt
Daniel MachadoNorwegian University of Science and TechnologyEmail confirmado em ntnu.no
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenEmail confirmado em chalmers.se
Christopher HenryComputational Biologist, Argonne National LaboratoryEmail confirmado em mcs.anl.gov
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OEmail confirmado em lbl.gov
Luis M. RochaGeorge J. Klir Professor of Systems Science and Industrial Engineering, Binghamton University (SUNY)Email confirmado em binghamton.edu

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Miguel Rocha

Associate Professor, Dept. Informatics and Centre Biological Engineering, Universidade do Minho

Email confirmado em di.uminho.pt

Bioinformatics Evolutionary Computation Systems Biology Machine Learning Neural Networks


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OptFlux: an open-source software platform for in silico metabolic engineering I Rocha, P Maia, P Evangelista, P Vilaça, S Soares, JP Pinto, J Nielsen, ... BMC systems biology 4 (1), 1-12, 2010	446	2010
Particle swarms for feedforward neural network training R Mendes, P Cortez, M Rocha, J Neves Proceedings of the 2002 International Joint Conference on Neural Networks …, 2002	408	2002
Multi‐scale Internet traffic forecasting using neural networks and time series methods P Cortez, M Rio, M Rocha, P Sousa Expert Systems 29 (2), 143-155, 2012	232	2012
Modeling formalisms in systems biology D Machado, RS Costa, M Rocha, EC Ferreira, B Tidor, I Rocha AMB express 1 (1), 1-14, 2011	228	2011
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019	222	2019
Internet traffic forecasting using neural networks P Cortez, M Rio, M Rocha, P Sousa The 2006 IEEE international joint conference on neural network proceedings …, 2006	167	2006
Reconstructing genome-scale metabolic models with merlin O Dias, M Rocha, EC Ferreira, I Rocha Nucleic acids research 43 (8), 3899-3910, 2015	150	2015
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ... The Lancet Oncology 18 (1), 132-142, 2017	143	2017
Metabolomics combined with chemometric tools (PCA, HCA, PLS-DA and SVM) for screening cassava (Manihot esculenta Crantz) roots during postharvest physiological deterioration VG Uarrota, R Moresco, B Coelho, E da Costa Nunes, LAM Peruch, ... Food Chemistry 161, 67-78, 2014	133	2014
Preventing premature convergence to local optima in genetic algorithms via random offspring generation M Rocha, J Neves Multiple Approaches to Intelligent Systems: 12th International Conference on …, 1999	133	1999
In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories P Maia, M Rocha, I Rocha Microbiology and Molecular Biology Reviews 80 (1), 45-67, 2016	128	2016
Evolution of neural networks for classification and regression M Rocha, P Cortez, J Neves Neurocomputing 70 (16-18), 2809-2816, 2007	127	2007
Natural computation meta-heuristics for the in silico optimization of microbial strains M Rocha, P Maia, R Mendes, JP Pinto, EC Ferreira, J Nielsen, KR Patil, ... BMC bioinformatics 9 (1), 1-16, 2008	126	2008
Evolving time series forecasting ARMA models P Cortez, M Rocha, J Neves Journal of Heuristics 10, 415-429, 2004	111	2004
Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models E Gonçalves, J Bucher, A Ryll, J Niklas, K Mauch, S Klamt, M Rocha, ... Molecular BioSystems 9 (7), 1576-1583, 2013	109	2013
Transcript level and sequence determinants of protein abundance and noise in Escherichia coli JC Guimaraes, M Rocha, AP Arkin Nucleic acids research 42 (8), 4791-4799, 2014	97	2014
Deep learning for drug response prediction in cancer D Baptista, PG Ferreira, M Rocha Briefings in bioinformatics 22 (1), 360-379, 2021	91	2021
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ... Molecular systems biology 17 (1), e9730, 2021	78	2021
The role of ascorbate peroxidase, guaiacol peroxidase, and polysaccharides in cassava (Manihot esculenta Crantz) roots under postharvest physiological deterioration VG Uarrota, R Moresco, EC Schmidt, ZL Bouzon, E da Costa Nunes, ... Food chemistry 197, 737-746, 2016	75	2016
Optimization of fed-batch fermentation processes with bio-inspired algorithms M Rocha, R Mendes, O Rocha, I Rocha, EC Ferreira Expert Systems with Applications 41 (5), 2186-2195, 2014	69	2014

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