Miguel Rocha

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Isabel RochaITQB NOVA - Universidade NOVA de LisboaEmail confirmado em itqb.unl.pt
Eugénio Campos FerreiraProfessor of Biological Engineering, Universidade do MinhoEmail confirmado em deb.uminho.pt
Paulo CortezFull Professor, ALGORITMI, Department Information Systems, University of MinhoEmail confirmado em dsi.uminho.pt
Jose Carlos Ferreira Maia NevesProfessor of Computer Science, The University of MinhoEmail confirmado em di.uminho.pt
Paulo MaiaSilicoLife SAEmail confirmado em silicolife.com
Marcelo MaraschinUniversidade Federal de Santa CatarinaEmail confirmado em ufsc.br
Miguel RioProfessor of Computer NetworksEmail confirmado em ucl.ac.uk
Oscar DiasUniversity of MinhoEmail confirmado em deb.uminho.pt
Florentino Fdez-RiverolaProfessor, Computer Science Department, University of VigoEmail confirmado em uvigo.es
Rui MendesAlgoritmi, DI, Universidade do MinhoEmail confirmado em di.uminho.pt
Virgilio Gavicho UarrotaUniversidad de O´HigginsEmail confirmado em uoh.cl
Kiran Raosaheb PatilMRC Toxicology Unit, University of CambridgeEmail confirmado em cam.ac.uk
José P. FariaAssistant Computational BiologistEmail confirmado em anl.gov
Julio Saez RodriguezHeidelberg UniversityEmail confirmado em uni-heidelberg.de
Bruno M. CostaLife and Health Sciences Research Institute (ICVS), School of Medicine, University of MinhoEmail confirmado em med.uminho.pt
Christopher HenryComputational Biologist, Argonne National LaboratoryEmail confirmado em mcs.anl.gov
Daniel MachadoNorwegian University of Science and TechnologyEmail confirmado em ntnu.no
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenEmail confirmado em chalmers.se
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OEmail confirmado em lbl.gov
Luis M. RochaGeorge J. Klir Professor of Systems Science and Industrial Engineering, Binghamton University (SUNY)Email confirmado em binghamton.edu

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Miguel Rocha

Associate Professor, Dept. Informatics and Centre Biological Engineering, Universidade do Minho

Email confirmado em di.uminho.pt

Bioinformatics Evolutionary Computation Systems Biology Machine Learning Neural Networks


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
OptFlux: an open-source software platform for in silico metabolic engineering I Rocha, P Maia, P Evangelista, P Vilaça, S Soares, JP Pinto, J Nielsen, ... BMC systems biology 4, 1-12, 2010	493	2010
Particle swarms for feedforward neural network training R Mendes, P Cortez, M Rocha, J Neves Proceedings of the 2002 International Joint Conference on Neural Networks …, 2002	425	2002
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019	312	2019
Multi‐scale Internet traffic forecasting using neural networks and time series methods P Cortez, M Rio, M Rocha, P Sousa Expert Systems 29 (2), 143-155, 2012	259	2012
Modeling formalisms in systems biology D Machado, RS Costa, M Rocha, EC Ferreira, B Tidor, I Rocha AMB express 1, 1-14, 2011	249	2011
Deep learning for drug response prediction in cancer D Baptista, PG Ferreira, M Rocha Briefings in bioinformatics 22 (1), 360-379, 2021	191	2021
Reconstructing genome-scale metabolic models with merlin O Dias, M Rocha, EC Ferreira, I Rocha Nucleic acids research 43 (8), 3899-3910, 2015	185	2015
Internet traffic forecasting using neural networks P Cortez, M Rio, M Rocha, P Sousa The 2006 IEEE international joint conference on neural network proceedings …, 2006	180	2006
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ... The Lancet Oncology 18 (1), 132-142, 2017	168	2017
Metabolomics combined with chemometric tools (PCA, HCA, PLS-DA and SVM) for screening cassava (Manihot esculenta Crantz) roots during postharvest physiological deterioration VG Uarrota, R Moresco, B Coelho, E da Costa Nunes, LAM Peruch, ... Food Chemistry 161, 67-78, 2014	165	2014
Evolution of neural networks for classification and regression M Rocha, P Cortez, J Neves Neurocomputing 70 (16-18), 2809-2816, 2007	149	2007
Preventing premature convergence to local optima in genetic algorithms via random offspring generation M Rocha, J Neves Multiple Approaches to Intelligent Systems: 12th International Conference on …, 1999	149	1999
In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories P Maia, M Rocha, I Rocha Microbiology and Molecular Biology Reviews 80 (1), 45-67, 2016	140	2016
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ... Molecular Systems Biology 17 (1), e9730, 2021	135	2021
Natural computation meta-heuristics for the in silico optimization of microbial strains M Rocha, P Maia, R Mendes, JP Pinto, EC Ferreira, J Nielsen, KR Patil, ... BMC bioinformatics 9, 1-16, 2008	130	2008
Generative deep learning for targeted compound design T Sousa, J Correia, V Pereira, M Rocha Journal of chemical information and modeling 61 (11), 5343-5361, 2021	127	2021
Evolving time series forecasting ARMA models P Cortez, M Rocha, J Neves Journal of Heuristics 10, 415-429, 2004	123	2004
Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models E Gonçalves, J Bucher, A Ryll, J Niklas, K Mauch, S Klamt, M Rocha, ... Molecular BioSystems 9 (7), 1576-1583, 2013	118	2013
Transcript level and sequence determinants of protein abundance and noise in Escherichia coli JC Guimaraes, M Rocha, AP Arkin Nucleic acids research 42 (8), 4791-4799, 2014	113	2014
A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering OD Kim, M Rocha, P Maia Frontiers in microbiology 9, 1690, 2018	96	2018

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