Juan Fernandez-Recio
Juan Fernandez-Recio
ICVV-CSIC / ex-BSC visitor
Verified email at bsc.es - Homepage
TitleCited byYear
Identification of protein–protein interaction sites from docking energy landscapes
J Fernandez-Recio, M Totrov, R Abagyan
Journal of molecular biology 335 (3), 843-865, 2004
2622004
pyDock: electrostatics and desolvation for effective scoring of rigid‐body protein–protein docking
TMK Cheng, TL Blundell, J Fernandez‐Recio
Proteins: Structure, Function, and Bioinformatics 68 (2), 503-515, 2007
2282007
ICM‐DISCO docking by global energy optimization with fully flexible side‐chains
J Fernández‐Recio, M Totrov, R Abagyan
Proteins: Structure, Function, and Bioinformatics 52 (1), 113-117, 2003
2212003
Soft protein–protein docking in internal coordinates
J Fernández‐Recio, M Totrov, R Abagyan
Protein Science 11 (2), 280-291, 2002
2202002
Optimal docking area: a new method for predicting protein–protein interaction sites
J Fernandez‐Recio, M Totrov, C Skorodumov, R Abagyan
PROTEINS: Structure, Function, and bioinformatics 58 (1), 134-143, 2005
2052005
Assembly and channel opening in a bacterial drug efflux machine
VN Bavro, Z Pietras, N Furnham, L Pérez-Cano, J Fernández-Recio, ...
Molecular cell 30 (1), 114-121, 2008
1652008
SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models
IH Moal, J Fernández-Recio
Bioinformatics 28 (20), 2600-2607, 2012
1582012
Polygalacturonase inhibiting proteins: players in plant innate immunity?
L Federici, A Di Matteo, J Fernandez-Recio, D Tsernoglou, F Cervone
Trends in plant science 11 (2), 65-70, 2006
1502006
The Crystal Structure of Fibroblast Growth Factor (FGF) 19 Reveals Novel Features of the FGF Family and Offers a Structural Basis for Its Unusual Receptor Affinity,
NJ Harmer, L Pellegrini, D Chirgadze, J Fernandez-Recio, TL Blundell
Biochemistry 43 (3), 629-640, 2004
1452004
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
1412015
SwarmDock: a server for flexible protein–protein docking
M Torchala, IH Moal, RAG Chaleil, J Fernandez-Recio, PA Bates
Bioinformatics 29 (6), 807-809, 2013
1392013
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1252011
The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 Ĺ resolution
L Federici, D Du, F Walas, H Matsumura, J Fernandez-Recio, ...
Journal of Biological Chemistry 280 (15), 15307-15314, 2005
1152005
The tryptophan/histidine interaction in α-helices
J Fernández-Recio, A Vázquez, C Civera, P Sevilla, J Sancho
Journal of molecular biology 267 (1), 184-197, 1997
1031997
pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring
B Jiménez-García, C Pons, J Fernández-Recio
Bioinformatics 29 (13), 1698-1699, 2013
1022013
FRODOCK: a new approach for fast rotational protein–protein docking
JI Garzon, JR Lopéz-Blanco, C Pons, J Kovacs, R Abagyan, ...
Bioinformatics 25 (19), 2544-2551, 2009
1012009
A model of a transmembrane drug‐efflux pump from Gram‐negative bacteria
J Fernandez-Recio, F Walas, L Federici, J Venkatesh Pratap, VN Bavro, ...
FEBS letters 578 (1-2), 5-9, 2004
952004
Identification of hot-spot residues in protein-protein interactions by computational docking
S Grosdidier, J Fernández-Recio
BMC bioinformatics 9 (1), 447, 2008
942008
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
882013
Optimal protein‐RNA area, OPRA: a propensity‐based method to identify RNA‐binding sites on proteins
L Pérez‐Cano, J Fernández‐Recio
Proteins: Structure, Function, and Bioinformatics 78 (1), 25-35, 2010
852010
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Articles 1–20