| Highly multiplexed subcellular RNA sequencing in situ JH Lee, ER Daugharthy, J Scheiman, R Kalhor, JL Yang, TC Ferrante, ... science 343 (6177), 1360-1363, 2014 | 1012 | 2014 |
| Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues JH Lee, ER Daugharthy, J Scheiman, R Kalhor, TC Ferrante, R Terry, ... Nature protocols 10 (3), 442-458, 2015 | 589 | 2015 |
| Nanoscale imaging of RNA with expansion microscopy F Chen, AT Wassie, AJ Cote, A Sinha, S Alon, S Asano, ER Daugharthy, ... Nature methods 13 (8), 679-684, 2016 | 377 | 2016 |
| Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems S Alon, DR Goodwin, A Sinha, AT Wassie, F Chen, ER Daugharthy, ... Science 371 (6528), eaax2656, 2021 | 270 | 2021 |
| 3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing HQ Nguyen, S Chattoraj, D Castillo, SC Nguyen, G Nir, A Lioutas, ... Nature methods 17 (8), 822-832, 2020 | 108 | 2020 |
| In situ nucleic acid sequencing of expanded biological samples ES Boyden, F Chen, S Alon, G Church, PW Tillberg, A Marblestone, ... US Patent 10,059,990, 2018 | 107 | 2018 |
| Surface capture of targets E Daugharthy, R Terry US Patent App. 17/226,590, 2021 | 84 | 2021 |
| Nanoscale imaging of proteins and nucleic acids via expansion microscopy A Wassie, F Chen, ES Boyden, S Alon, G Church, E Daugharthy US Patent 10,364,457, 2019 | 76 | 2019 |
| Method of generating a three-dimensional nucleic acid containing matrix GM Church, JH Lee, RC Terry | 75 | 2014 |
| Method for generating a three-dimensional nucleic acid containing matrix GM Church, JH Lee, RC Terry, ER Daugharthy US Patent 10,138,509, 2018 | 69 | 2018 |
| Methods of combining the detection of biomolecules into a single assay using fluorescent in situ sequencing GM Church, ER Daugharthy, RC Terry US Patent 11,447,807, 2022 | 53 | 2022 |
| Methods and systems for sample processing or analysis E Daugharthy, R Terry US Patent 11,193,163, 2021 | 50 | 2021 |
| Methods for detecting and identifying genomic nucleic acids ER Daugharthy, SC Nguyen, C Wu, GM Church US Patent 10,844,426, 2020 | 50 | 2020 |
| Methods of Generating Libraries of Nucleic Acid Sequences for Detection via Fluorescent in Situ Sequ GM Church, ER Daugharthy, RC Terry, BW Pruitt, BM Turczyk US Patent App. 16/458,268, 2019 | 49 | 2019 |
| Methods for high-throughput labelling and detection of biological features in situ using microscopy GM Church, JH Lee, ER Daugharthy US Patent 10,179,932, 2019 | 46 | 2019 |
| Methods for High-Throughput Labelling and Detection of Biological Features In Situ Using Microscopy GM Church, JH Lee, ER Daugharthy US Patent App. 16/200,831, 2019 | 44 | 2019 |
| Method and apparatus for volumetric imaging of a three-dimensional nucleic acid containing matrix ER Daugharthy, RC Terry, JH Lee, GM Church, BW Pruitt US Patent 10,266,888, 2019 | 42 | 2019 |
| Method for Generating A Three-Dimensional Nucleic Acid Containing Matrix GM Church, JH Lee, RC Terry, ER Daugharthy US Patent App. 16/941,585, 2020 | 35 | 2020 |
| Pervasive antisense transcription is evolutionarily conserved in budding yeast AJ Goodman, ER Daugharthy, J Kim Molecular biology and evolution 30 (2), 409-421, 2012 | 28 | 2012 |
| Rosetta brains: a strategy for molecularly-annotated connectomics AH Marblestone, ER Daugharthy, R Kalhor, ID Peikon, JM Kebschull, ... arXiv preprint arXiv:1404.5103, 2014 | 25 | 2014 |
