| Identification of fibril-like tertiary contacts in soluble monomeric α-synuclein S Esteban-Martín, J Silvestre-Ryan, CW Bertoncini, X Salvatella Biophysical Journal 105 (5), 1192-1198, 2013 | 67 | 2013 |
| Pair consensus decoding improves accuracy of neural network basecallers for nanopore sequencing J Silvestre-Ryan, I Holmes Genome biology 22, 1-6, 2021 | 53 | 2021 |
| Protein allostery at the solid–liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft Y Lin, J Silvestre-Ryan, ME Himmel, MF Crowley, GT Beckham, JW Chu Journal of the American Chemical Society 133 (41), 16617-16624, 2011 | 29 | 2011 |
| Average conformations determined from PRE data provide high-resolution maps of transient tertiary interactions in disordered proteins J Silvestre-Ryan, CW Bertoncini, RB Fenwick, S Esteban-Martin, ... Biophysical Journal 104 (8), 1740-1751, 2013 | 28 | 2013 |
| “Fluctuograms” Reveal the Intermittent Intra-Protein Communication in Subtilisin Carlsberg and Correlate Mechanical Coupling with Co-Evolution J Silvestre-Ryan, Y Lin, JW Chu PLoS Computational Biology 7 (3), e1002023, 2011 | 20 | 2011 |
| Machine Boss: rapid prototyping of bioinformatic automata J Silvestre-Ryan, Y Wang, M Sharma, S Lin, Y Shen, S Dider, I Holmes Bioinformatics 37 (1), 29-35, 2021 | 4 | 2021 |
| Consensus decoding of recurrent neural network basecallers J Silvestre-Ryan, I Holmes Algorithms for Computational Biology: 5th International Conference, AlCoB …, 2018 | 3 | 2018 |
| CellScape: Protein structure visualization with vector graphics cartoons J Silvestre-Ryan, DA Fletcher, I Holmes bioRxiv, 2022.06. 14.495869, 2022 | | 2022 |
| Computational Methods for Higher Accuracy Nanopore Sequencing JJ Silvestre-Ryan University of California, Berkeley, 2022 | | 2022 |
