Adina Howe
Title
Cited by
Cited by
Year
Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data
M Vital, AC Howe, JM Tiedje
MBio 5 (2), e00889-14, 2014
5342014
Tackling soil diversity with the assembly of large, complex metagenomes
AC Howe, JK Jansson, SA Malfatti, SG Tringe, JM Tiedje, CT Brown
Proceedings of the National Academy of Sciences 111 (13), 4904-4909, 2014
2912014
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000Research 4, 2015
2602015
Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter
L Žifčáková, T Větrovský, A Howe, P Baldrian
Environmental microbiology 18 (1), 288-301, 2016
2542016
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
J Pell, A Hintze, R Canino-Koning, A Howe, JM Tiedje, CT Brown
Proceedings of the National Academy of Sciences 109 (33), 13272-13277, 2012
2402012
A reference-free algorithm for computational normalization of shotgun sequencing data
CT Brown, A Howe, Q Zhang, AB Pyrkosz, TH Brom
arXiv preprint arXiv:1203.4802, 2012
2262012
Demonstrating microbial co-occurrence pattern analyses within and between ecosystems
RJ Williams, A Howe, KS Hofmockel
Frontiers in microbiology 5, 358, 2014
2182014
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
EM Schwarz, PK Korhonen, BE Campbell, ND Young, AR Jex, A Jabbar, ...
Genome biology 14 (8), 1-18, 2013
1932013
A meta-analysis of global fungal distribution reveals climate-driven patterns
T Větrovský, P Kohout, M Kopecký, A Machac, M Man, BD Bahnmann, ...
Nature communications 10 (1), 1-9, 2019
802019
Metagenomic approaches for direct and cell culture evaluation of the virological quality of wastewater
TG Aw, A Howe, JB Rose
Journal of virological methods 210, 15-21, 2014
682014
Feed in summer, rest in winter: microbial carbon utilization in forest topsoil
L Žifčáková, T Větrovský, V Lombard, B Henrissat, A Howe, P Baldrian
Microbiome 5 (1), 1-12, 2017
672017
Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice
A Howe, DL Ringus, RJ Williams, ZN Choo, SM Greenwald, SM Owens, ...
The ISME journal 10 (5), 1217-1227, 2016
672016
Strategies to improve reference databases for soil microbiomes
J Choi, F Yang, R Stepanauskas, E Cardenas, A Garoutte, R Williams, ...
The ISME journal 11 (4), 829-834, 2017
662017
These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure
Q Zhang, J Pell, R Canino-Koning, AC Howe, CT Brown
PloS one 9 (7), e101271, 2014
662014
Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements
RD Stedtfeld, X Guo, TM Stedtfeld, H Sheng, MR Williams, K Hauschild, ...
FEMS microbiology ecology 94 (9), fiy130, 2018
442018
Complexities in understanding antimicrobial resistance across domesticated animal, human, and environmental systems
DW Graham, G Bergeron, MW Bourassa, J Dickson, F Gomes, A Howe, ...
Annals of the New York Academy of Sciences 1441 (1), 17, 2019
422019
Metagenomic insights into the degradation of resistant starch by human gut microbiota
M Vital, A Howe, N Bergeron, RM Krauss, JK Jansson, JM Tiedje
Applied and environmental microbiology 84 (23), e01562-18, 2018
382018
Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)
A Howe, PSG Chain
Frontiers in microbiology 6, 678, 2015
342015
Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data. mBio 5: e00889-14
M Vital, AC Howe, JM Tiedje
292014
Mechanism controlling the extended lag period associated with vinyl chloride starvation in Nocardioides sp. strain JS614
TE Mattes, NV Coleman, AS Chuang, AJ Rogers, JC Spain, JM Gossett
Archives of microbiology 187 (3), 217-226, 2007
292007
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Articles 1–20