A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world X Yang, JC Cushman, AM Borland, EJ Edwards, SD Wullschleger, ... New Phytologist 207 (3), 491-504, 2015 | 255 | 2015 |
Environmental proteomics of microbial plankton in a highly productive coastal upwelling system SM Sowell, PE Abraham, M Shah, NC Verberkmoes, DP Smith, ... The ISME journal 5 (5), 856-865, 2011 | 185 | 2011 |
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism X Yang, R Hu, H Yin, J Jenkins, S Shu, H Tang, D Liu, DA Weighill, ... Nature communications 8 (1), 1899, 2017 | 164 | 2017 |
Transcript, protein and metabolite temporal dynamics in the CAM plant Agave PE Abraham, H Yin, AM Borland, D Weighill, SD Lim, HC De Paoli, ... Nature Plants 2 (12), 1-10, 2016 | 156 | 2016 |
Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation MJ Wilkins, NC VerBerkmoes, KH Williams, SJ Callister, PJ Mouser, ... Applied and environmental microbiology 75 (20), 6591-6599, 2009 | 151 | 2009 |
Discovery and annotation of small proteins using genomics, proteomics, and computational approaches X Yang, TJ Tschaplinski, GB Hurst, S Jawdy, PE Abraham, PK Lankford, ... Genome research 21 (4), 634-641, 2011 | 137 | 2011 |
Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota W Xiong, PE Abraham, Z Li, C Pan, RL Hettich Proteomics 15 (20), 3424-3438, 2015 | 128 | 2015 |
Eliminating a global regulator of carbon catabolite repression enhances the conversion of aromatic lignin monomers to muconate in Pseudomonas putida KT2440 CW Johnson, PE Abraham, JG Linger, P Khanna, RL Hettich, ... Metabolic engineering communications 5, 19-25, 2017 | 125 | 2017 |
Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440 D Salvachúa, AZ Werner, I Pardo, M Michalska, BA Black, BS Donohoe, ... Proceedings of the National Academy of Sciences 117 (17), 9302-9310, 2020 | 115 | 2020 |
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows T Van Den Bossche, BJ Kunath, K Schallert, SS Schäpe, PE Abraham, ... Nature communications 12 (1), 7305, 2021 | 79 | 2021 |
Metabolism of syringyl lignin-derived compounds in Pseudomonas putida enables convergent production of 2-pyrone-4, 6-dicarboxylic acid S Notonier, AZ Werner, E Kuatsjah, L Dumalo, PE Abraham, EA Hatmaker, ... Metabolic engineering 65, 111-122, 2021 | 71 | 2021 |
Proteomics‐inferred genome typing (PIGT) demonstrates inter‐population recombination as a strategy for environmental adaptation VJ Denef, NC VerBerkmoes, MB Shah, P Abraham, M Lefsrud, RL Hettich, ... Environmental microbiology 11 (2), 313-325, 2009 | 71 | 2009 |
The nature of the progression of drought stress drives differential metabolomic responses in Populus deltoides TJ Tschaplinski, PE Abraham, SS Jawdy, LE Gunter, MZ Martin, NL Engle, ... Annals of Botany 124 (4), 617-626, 2019 | 56 | 2019 |
Phosphorylation of ribosomal protein RPS6 integrates light signals and circadian clock signals R Enganti, SK Cho, JD Toperzer, RA Urquidi-Camacho, OS Cakir, AP Ray, ... Frontiers in plant science 8, 2210, 2018 | 53 | 2018 |
Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave H Yin, HB Guo, DJ Weston, AM Borland, P Ranjan, PE Abraham, ... BMC genomics 19, 1-16, 2018 | 52 | 2018 |
Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics P Abraham, R Adams, RJ Giannone, U Kalluri, P Ranjan, B Erickson, ... Journal of proteome research 11 (1), 449-460, 2012 | 49 | 2012 |
Bioprospecting Trichoderma: A Systematic Roadmap to Screen Genomes and Natural Products for Biocontrol Applications TA Rush, HK Shrestha, M Gopalakrishnan Meena, MK Spangler, JC Ellis, ... Frontiers in Fungal Biology 2, 716511, 2021 | 48 | 2021 |
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis J Wippler, M Kleiner, C Lott, A Gruhl, PE Abraham, RJ Giannone, ... BMC genomics 17, 1-19, 2016 | 44 | 2016 |
Microevolution in the pansecondary metabolome of Aspergillus flavus and its potential macroevolutionary implications for filamentous fungi MT Drott, TA Rush, TR Satterlee, RJ Giannone, PE Abraham, C Greco, ... Proceedings of the National Academy of Sciences 118 (21), e2021683118, 2021 | 43 | 2021 |
Ecosystem consequences of introducing plant growth promoting rhizobacteria to managed systems and potential legacy effects JAM Moore, PE Abraham, JK Michener, W Muchero, MA Cregger New Phytologist 234 (6), 1914-1918, 2022 | 42 | 2022 |