| Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 569 | 2019 |
| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 461 | 2020 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 325 | 2020 |
| Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 274 | 2021 |
| Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 219 | 2021 |
| A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 190 | 2021 |
| Deep learning in proteomics B Wen, WF Zeng, Y Liao, Z Shi, SR Savage, W Jiang, B Zhang Proteomics 20 (21-22), 1900335, 2020 | 124 | 2020 |
| A highly annotated database of genes associated with platinum resistance in cancer D Huang, SR Savage, AP Calinawan, C Lin, B Zhang, P Wang, TK Starr, ... Oncogene 40 (46), 6395-6405, 2021 | 61 | 2021 |
| Using phosphoproteomics data to understand cellular signaling: a comprehensive guide to bioinformatics resources SR Savage, B Zhang Clinical Proteomics 17 (1), 27, 2020 | 48 | 2020 |
| Hypoxia-induced expression of VEGF splice variants and protein in four retinal cell types WM Watkins, GW McCollum, SR Savage, ME Capozzi, JS Penn, ... Experimental eye research 116, 240-246, 2013 | 35 | 2013 |
| Multiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory, high-grade serous ovarian cancer D Huang, S Chowdhury, H Wang, SR Savage, RG Ivey, JJ Kennedy, ... Cell Reports Medicine 2 (12), 2021 | 32 | 2021 |
| RNA-seq identifies a role for the PPARβ/δ inverse agonist GSK0660 in the regulation of TNFα-induced cytokine signaling in retinal endothelial cells SR Savage, GW McCollum, R Yang, JS Penn Molecular vision 21, 568, 2015 | 31 | 2015 |
| Peroxisome proliferator-activated receptor-β/δ regulates angiogenic cell behaviors and oxygen-induced retinopathy ME Capozzi, GW McCollum, SR Savage, JS Penn Investigative ophthalmology & visual science 54 (6), 4197-4207, 2013 | 30 | 2013 |
| Proteogenomic data and resources for pan-cancer analysis Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ... Cancer Cell 41 (8), 1397-1406, 2023 | 23 | 2023 |
| caAtlas: An immunopeptidome atlas of human cancer X Yi, Y Liao, B Wen, K Li, Y Dou, SR Savage, B Zhang Cancer Research 81 (13 Supplement), 1895-1895, 2021 | 23 | 2021 |
| Hemin-Induced Death Models Hemorrhagic Stroke and Is a Variant of Classical Neuronal Ferroptosis M Zille, JA Oses-Prieto, SR Savage, SS Karuppagounder, Y Chen, ... Journal of Neuroscience 42 (10), 2065-2079, 2022 | 22 | 2022 |
| The role of the NFAT signaling pathway in retinal neovascularization CA Bretz, S Savage, M Capozzi, JS Penn Investigative ophthalmology & visual science 54 (10), 7020-7027, 2013 | 22 | 2013 |
| Graph algorithms for condensing and consolidating gene set analysis results SR Savage, Z Shi, Y Liao, B Zhang Molecular & Cellular Proteomics 18 (8), S141-S152, 2019 | 20 | 2019 |
| RNA-Seq reveals a role for NFAT-signaling in human retinal microvascular endothelial cells treated with TNFα SR Savage, CA Bretz, JS Penn PloS one 10 (1), e0116941, 2015 | 20 | 2015 |
| Clinical Proteomic Tumor Analysis Consortium Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225, 2020 | 19 | 2020 |
