| Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment I Kufareva, M Rueda, V Katritch, G Dock, RC Stevens, R Abagyan Structure 19 (8), 1108-1126, 2011 | 305 | 2011 |
| Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008 M Michino, E Abola, CL Brooks, JS Dixon, J Moult, RC Stevens Nature Reviews Drug Discovery 8 (6), 455-463, 2009 | 282 | 2009 |
| A consensus view of protein dynamics M Rueda, C Ferrer-Costa, T Meyer, A Pérez, J Camps, JL Gelpí, M Orozco Proceedings of the National Academy of Sciences 104 (3), 796-801, 2007 | 243 | 2007 |
| Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution Part 1. Cytosine SA Trygubenko, TV Bogdan, M Rueda, M Orozco, FJ Luque, J Šponer, ... Physical Chemistry Chemical Physics 4 (17), 4192-4203, 2002 | 191 | 2002 |
| Thorough validation of protein normal mode analysis: a comparative study with essential dynamics M Rueda, P Chacón, M Orozco Structure 15 (5), 565-575, 2007 | 162 | 2007 |
| Recipes for the selection of experimental protein conformations for virtual screening M Rueda, G Bottegoni, R Abagyan Journal of chemical information and modeling 50 (1), 186-193, 2010 | 144 | 2010 |
| Whole-genome sequencing of a healthy aging cohort GA Erikson, DL Bodian, M Rueda, B Molparia, ER Scott, ... Cell 165 (4), 1002-1011, 2016 | 143 | 2016 |
| GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex V Katritch, M Rueda, PCH Lam, M Yeager, R Abagyan Proteins: Structure, Function, and Bioinformatics 78 (1), 197-211, 2010 | 129 | 2010 |
| The structure and dynamics of DNA in the gas phase M Rueda, SG Kalko, FJ Luque, M Orozco Journal of the American Chemical Society 125 (26), 8007-8014, 2003 | 129 | 2003 |
| Consistent improvement of cross-docking results using binding site ensembles generated with elastic network normal modes M Rueda, G Bottegoni, R Abagyan Journal of chemical information and modeling 49 (3), 716-725, 2009 | 105 | 2009 |
| Essential dynamics: a tool for efficient trajectory compression and management T Meyer, C Ferrer-Costa, A Pérez, M Rueda, A Bidon-Chanal, FJ Luque, ... Journal of Chemical Theory and Computation 2 (2), 251-258, 2006 | 105 | 2006 |
| Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations? M Rueda, E Cubero, CA Laughton, M Orozco Biophysical Journal 87 (2), 800-811, 2004 | 96 | 2004 |
| MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories T Meyer, M D'Abramo, A Hospital, M Rueda, C Ferrer-Costa, A Pérez, ... Structure 18 (11), 1399-1409, 2010 | 95 | 2010 |
| FlexServ: an integrated tool for the analysis of protein flexibility J Camps, O Carrillo, A Emperador, L Orellana, A Hospital, M Rueda, ... Bioinformatics 25 (13), 1709-1710, 2009 | 89 | 2009 |
| G-quadruplexes can maintain their structure in the gas phase M Rueda, FJ Luque, M Orozco Journal of the American Chemical Society 128 (11), 3608-3619, 2006 | 88 | 2006 |
| Systematic exploitation of multiple receptor conformations for virtual ligand screening G Bottegoni, W Rocchia, M Rueda, R Abagyan, A Cavalli PloS one 6 (5), e18845, 2011 | 69 | 2011 |
| Exploring the essential dynamics of B-DNA A Pérez, JR Blas, M Rueda, JM López-Bes, X de la Cruz, M Orozco Journal of chemical theory and computation 1 (5), 790-800, 2005 | 62 | 2005 |
| Approaching elastic network models to molecular dynamics flexibility L Orellana, M Rueda, C Ferrer-Costa, JR Lopez-Blanco, P Chacón, ... Journal of Chemical Theory and Computation 6 (9), 2910-2923, 2010 | 56 | 2010 |
| Exploring the suitability of coarse-grained techniques for the representation of protein dynamics A Emperador, O Carrillo, M Rueda, M Orozco Biophysical journal 95 (5), 2127-2138, 2008 | 55 | 2008 |
| ALiBERO: evolving a team of complementary pocket conformations rather than a single leader M Rueda, M Totrov, R Abagyan Journal of chemical information and modeling 52 (10), 2705-2714, 2012 | 45 | 2012 |
Modesto OrozcoProfessor of Biochemistry, Universtity of BarcelonaVerified email at irbbarcelona.org
