| A survey and evaluation of FPGA high-level synthesis tools R Nane, VM Sima, C Pilato, J Choi, B Fort, A Canis, YT Chen, H Hsiao, ... IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2015 | 777 | 2015 |
| Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths EJ Houtgast, VM Sima, K Bertels, Z Al-Ars Computational biology and chemistry 75, 54-64, 2018 | 141 | 2018 |
| DWARV 2.0: A CoSy-based C-to-VHDL hardware compiler R Nane, VM Sima, B Olivier, R Meeuws, Y Yankova, K Bertels 22nd International Conference on Field Programmable Logic and Applications …, 2012 | 128 | 2012 |
| An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm EJ Houtgast, VM Sima, K Bertels, Z Al-Ars 2015 international conference on embedded computer systems: Architectures …, 2015 | 76 | 2015 |
| Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm N Ahmed, VM Sima, E Houtgast, K Bertels, Z Al-Ars 2015 IEEE/ACM International Conference on Computer-Aided Design (ICCAD), 240-246, 2015 | 60 | 2015 |
| FPGA acceleration of the pair-HMMs forward algorithm for DNA sequence analysis S Ren, VM Sima, Z Al-Ars 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015 | 52 | 2015 |
| Hartes: Hardware-software codesign for heterogeneous multicore platforms K Bertels, VM Sima, Y Yankova, G Kuzmanov, W Luk, G Coutinho, ... IEEE micro 30 (5), 88-97, 2010 | 38 | 2010 |
| GPU-accelerated BWA-MEM genomic mapping algorithm using adaptive load balancing EJ Houtgast, VM Sima, K Bertels, Z Al-Ars Architecture of Computing Systems–ARCS 2016: 29th International Conference …, 2016 | 37 | 2016 |
| Using multi-objective design space exploration to enable run-time resource management for reconfigurable architectures G Mariani, VM Sima, G Palermo, V Zaccaria, C Silvano, K Bertels 2012 Design, Automation & Test in Europe Conference & Exhibition (DATE …, 2012 | 34 | 2012 |
| Runtime decision of hardware or software execution on a heterogeneous reconfigurable platform VM Sima, K Bertels 2009 IEEE International Symposium on Parallel & Distributed Processing, 1-6, 2009 | 30 | 2009 |
| High performance streaming Smith-Waterman implementation with implicit synchronization on intel FPGA using OpenCL E Houtgast, VM Sima, Z Al-Ars 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017 | 26 | 2017 |
| Compiler assisted runtime task scheduling on a reconfigurable computer M Sabeghi, VM Sima, K Bertels 2009 International Conference on Field Programmable Logic and Applications …, 2009 | 22 | 2009 |
| An efficient gpuaccelerated implementation of genomic short read mapping with bwamem EJ Houtgast, VM Sima, K Bertels, Z AlArs ACM SIGARCH Computer Architecture News 44 (4), 38-43, 2017 | 20 | 2017 |
| High-level synthesis in the delft workbench hardware/software co-design tool-chain R Nane, VM Sima, CP Quoc, F Goncalves, K Bertels 2014 12th IEEE International Conference on Embedded and Ubiquitous Computing …, 2014 | 20 | 2014 |
| REFLECT: rendering FPGAs to multi-core embedded computing JMP Cardoso, PC Diniz, Z Petrov, K Bertels, M Hübner, H van Someren, ... Reconfigurable Computing: From FPGAs to Hardware/Software Codesign, 261-289, 2011 | 19 | 2011 |
| Power-efficiency analysis of accelerated BWA-MEM implementations on heterogeneous computing platforms EJ Houtgast, VM Sima, G Marchiori, K Bertels, Z Al-Ars 2016 international conference on reconfigurable computing and fpgas …, 2016 | 17 | 2016 |
| Quipu: A statistical model for predicting hardware resources R Meeuws, SA Ostadzadeh, C Galuzzi, VM Sima, R Nane, K Bertels ACM Transactions on Reconfigurable Technology and Systems (TRETS) 6 (1), 1-25, 2013 | 12 | 2013 |
| Hartes toolchain early evaluation: Profiling, Compilation and HDL generation K Bertels, G Kuzmanov, EM Panainte, G Gaydadjiev, Y Yankova, ... 2007 International Conference on Field Programmable Logic and Applications …, 2007 | 12 | 2007 |
| Area constraint propagation in high level synthesis R Nane, VM Sima, K Bertels 2012 International Conference on Field-Programmable Technology, 247-252, 2012 | 9* | 2012 |
| Comparative analysis of system-level acceleration techniques in bioinformatics: A case study of accelerating the smith-waterman algorithm for bwa-mem EJ Houtgast, VM Sima, K Bertels, Z Al-Ars 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering …, 2018 | 7 | 2018 |
Koen BertelsQBee.eu, visiting professor KAIST and Un. of GhentVerified email at qbee.eu
