Aram Davtyan
Aram Davtyan
Center for Theoretical Biological Physics at Rice University
Verified email at rice.edu - Homepage
Title
Cited by
Cited by
Year
AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasing
A Davtyan, NP Schafer, W Zheng, C Clementi, PG Wolynes, GA Papoian
The Journal of Physical Chemistry B 116 (29), 8494-8503, 2012
1622012
Predictive energy landscapes for protein–protein association
W Zheng, NP Schafer, A Davtyan, GA Papoian, PG Wolynes
Proceedings of the National Academy of Sciences 109 (47), 19244-19249, 2012
872012
Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence
A Davtyan, JF Dama, GA Voth, HC Andersen
The Journal of Chemical Physics 142 (15), 154104, 2015
632015
The theory of ultra-coarse-graining. 2. Numerical implementation
A Davtyan, JF Dama, AV Sinitskiy, GA Voth
Journal of chemical theory and computation 10 (12), 5265-5275, 2014
372014
Dynamic force matching: construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics
A Davtyan, GA Voth, HC Andersen
The Journal of chemical physics 145 (22), 224107, 2016
212016
The mesoscopic membrane with proteins (MesM-P) model
A Davtyan, M Simunovic, GA Voth
The Journal of Chemical Physics 147 (4), 044101, 2017
122017
Multiscale simulations of protein-facilitated membrane remodeling
A Davtyan, M Simunovic, GA Voth
Journal of structural biology 196 (1), 57-63, 2016
122016
Insights into the cooperative nature of ATP hydrolysis in actin filaments
HH Katkar, A Davtyan, AEP Durumeric, GM Hocky, AC Schramm, ...
Biophysical journal 115 (8), 1589-1602, 2018
102018
Insights into the Cooperative Nature of ATP Hydrolysis in Actin Filaments
GAV Harshwardhan H. Katkar, Aram Davtyan, Aleksander E.P. Durumeric, Glen M ...
Biophysical Journal 115 (8), 1589-1602, 2018
102018
Braiding topology and the energy landscape of chromosome organization proteins
D Krepel, A Davtyan, NP Schafer, PG Wolynes, JN Onuchic
Proceedings of the National Academy of Sciences 117 (3), 1468-1477, 2020
52020
Unusual Organization of I-BAR Proteins on Tubular and Vesicular Membranes
Z Jarin, FC Tsai, A Davtyan, AJ Pak, P Bassereau, GA Voth
Biophysical journal 117 (3), 553-562, 2019
52019
Environmental fluctuations and stochastic resonance in protein folding
K Dave, A Davtyan, GA Papoian, M Gruebele, M Platkov
ChemPhysChem 17 (9), 1341-1348, 2016
42016
Awsem-md: coarse-grained protein structure prediction using physical potentials and bioinformatically based local structure biasing
A Davtyan, W Zheng, N Schafer, P Wolynes, G Papoian
Biophysical Journal 102 (3), 619a, 2012
42012
Stochastic resonance in protein folding dynamics
A Davtyan, M Platkov, M Gruebele, GA Papoian
ChemPhysChem 17 (9), 1305-1313, 2016
22016
Mesoscopic Liquid Clusters Represent a Distinct Condensate of Mutant p53
PG Vekilov, DS Yang, A Saeedi, A Davtyan, M Fathi, M Safari, A Klindziuk, ...
bioRxiv, 2020
12020
Theoretical insights into mechanisms of channel-facilitated molecular transport in the presence of stochastic gating
A Davtyan, AB Kolomeisky
The Journal of chemical physics 150 (12), 124111, 2019
12019
AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes
S Jin, VG Contessoto, M Chen, NP Schafer, W Lu, X Chen, C Bueno, ...
Nucleic Acids Research, 2020
2020
Unveiling molecular mechanisms of Kinesin-5 function using multiscale computational techniques
A Davtyan, Q Wang, AB Kolomeisky
Biophysical Journal 116 (3), 409a, 2019
2019
Theoretical Insights into Mechanisms of Stochastic Gating in Channel-Facilitated Molecular Transport
A Davtyan, AB Kolomeisky
arXiv preprint arXiv:1812.07693, 2018
2018
Unveiling Molecular Mechanisms of Kinesin-5 Function Using Multiscale Computational Techniques
A Davtyan, Q Wang, A Kolomeisky
APS 2018, L60. 260, 2018
2018
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Articles 1–20