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Christoph Ziegenhain
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Comparative analysis of single-cell RNA sequencing methods
C Ziegenhain, B Vieth, S Parekh, B Reinius, A Guillaumet-Adkins, ...
Molecular cell 65 (4), 631-643. e4, 2017
13772017
Single-cell RNA counting at allele and isoform resolution using Smart-seq3
M Hagemann-Jensen, C Ziegenhain, P Chen, D Ramsköld, GJ Hendriks, ...
Nature biotechnology 38 (6), 708-714, 2020
4652020
Evolutionary routes and KRAS dosage define pancreatic cancer phenotypes
S Mueller, T Engleitner, R Maresch, M Zukowska, S Lange, ...
Nature 554 (7690), 62-68, 2018
3692018
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects
E Mereu, A Lafzi, C Moutinho, C Ziegenhain, DJ McCarthy, ...
Nature biotechnology 38 (6), 747-755, 2020
3332020
zUMIs-A fast and flexible pipeline to process RNA sequencing data with UMIs
S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann
Gigascience 7 (6), giy059, 2018
3042018
Characterization of rare, dormant, and therapy-resistant cells in acute lymphoblastic leukemia
S Ebinger, EZ Özdemir, C Ziegenhain, S Tiedt, CC Alves, M Grunert, ...
Cancer cell 30 (6), 849-862, 2016
2652016
The impact of amplification on differential expression analyses by RNA-seq
S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann
Scientific reports 6 (1), 25533, 2016
2532016
A systematic evaluation of single cell RNA-seq analysis pipelines
B Vieth, S Parekh, C Ziegenhain, W Enard, I Hellmann
Nature communications 10 (1), 4667, 2019
2482019
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq
JW Bagnoli, C Ziegenhain, A Janjic, LE Wange, B Vieth, S Parekh, ...
Nature communications 9 (1), 2937, 2018
2272018
powsimR: power analysis for bulk and single cell RNA-seq experiments
B Vieth, C Ziegenhain, S Parekh, W Enard, I Hellmann
Bioinformatics 33 (21), 3486-3488, 2017
1412017
GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency
C Krendl, D Shaposhnikov, V Rishko, C Ori, C Ziegenhain, S Sass, ...
Proceedings of the National Academy of Sciences 114 (45), E9579-E9588, 2017
1232017
Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes
M Witzel, D Petersheim, Y Fan, E Bahrami, T Racek, M Rohlfs, J Puchałka, ...
Nature genetics 49 (5), 742-752, 2017
992017
Scalable single-cell RNA sequencing from full transcripts with Smart-seq3xpress
M Hagemann-Jensen, C Ziegenhain, R Sandberg
Nature Biotechnology 40 (10), 1452-1457, 2022
61*2022
Non-canonical Wnt/PCP signalling regulates intestinal stem cell lineage priming towards enteroendocrine and Paneth cell fates
A Böttcher, M Büttner, S Tritschler, M Sterr, A Aliluev, L Oppenländer, ...
Nature cell biology 23 (1), 23-31, 2021
582021
Quantitative single-cell transcriptomics
C Ziegenhain, B Vieth, S Parekh, I Hellmann, W Enard
Briefings in functional genomics 17 (4), 220-232, 2018
572018
Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals
CB Mulholland, A Nishiyama, J Ryan, R Nakamura, M Yiğit, IM Glück, ...
Nature communications 11 (1), 5972, 2020
512020
Niche WNT5A regulates the actin cytoskeleton during regeneration of hematopoietic stem cells
C Schreck, R Istvánffy, C Ziegenhain, T Sippenauer, F Ruf, L Henkel, ...
Journal of experimental medicine 214 (1), 165-181, 2017
482017
Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa
ET Granato, C Ziegenhain, RL Marvig, R Kümmerli
The ISME journal 12 (12), 2907-2918, 2018
422018
Prime-seq, efficient and powerful bulk RNA sequencing
A Janjic, LE Wange, JW Bagnoli, J Geuder, P Nguyen, D Richter, B Vieth, ...
Genome Biology 23 (1), 88, 2022
382022
Altered social behavior in mice carrying a cortical Foxp2 deletion
VP Medvedeva, MA Rieger, B Vieth, C Mombereau, C Ziegenhain, ...
Human molecular genetics 28 (5), 701-717, 2019
372019
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