Christoph Ziegenhain
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Comparative analysis of single-cell RNA sequencing methods
C Ziegenhain, B Vieth, S Parekh, B Reinius, A Guillaumet-Adkins, ...
Molecular cell 65 (4), 631-643. e4, 2017
Evolutionary routes and KRAS dosage define pancreatic cancer phenotypes
S Mueller, T Engleitner, R Maresch, M Zukowska, S Lange, ...
Nature 554 (7690), 62-68, 2018
Characterization of rare, dormant, and therapy-resistant cells in acute lymphoblastic leukemia
S Ebinger, EZ Özdemir, C Ziegenhain, S Tiedt, CC Alves, M Grunert, ...
Cancer cell 30 (6), 849-862, 2016
zUMIs-a fast and flexible pipeline to process RNA sequencing data with UMIs
S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann
Gigascience, 2018
The impact of amplification on differential expression analyses by RNA-seq
S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann
Scientific reports 6 (1), 1-11, 2016
Single-cell RNA counting at allele and isoform resolution using Smart-seq3
M Hagemann-Jensen, C Ziegenhain, P Chen, D Ramsköld, GJ Hendriks, ...
Nature Biotechnology 38 (6), 708-714, 2020
A systematic evaluation of single cell RNA-seq analysis pipelines
B Vieth, S Parekh, C Ziegenhain, W Enard, I Hellmann
Nature communications 10 (1), 1-11, 2019
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects
E Mereu, A Lafzi, C Moutinho, C Ziegenhain, DJ McCarthy, ...
Nature Biotechnology 38 (6), 747-755, 2020
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq
JW Bagnoli, C Ziegenhain, A Janjic, LE Wange, B Vieth, S Parekh, ...
Nature communications 9 (1), 1-8, 2018
powsimR: power analysis for bulk and single cell RNA-seq experiments
B Vieth, C Ziegenhain, S Parekh, W Enard, I Hellmann
Bioinformatics 33 (21), 3486-3488, 2017
Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes
M Witzel, D Petersheim, Y Fan, E Bahrami, T Racek, M Rohlfs, J Puchałka, ...
Nature genetics 49 (5), 742-752, 2017
Quantitative single-cell transcriptomics
C Ziegenhain, B Vieth, S Parekh, I Hellmann, W Enard
Briefings in functional genomics 17 (4), 220-232, 2018
GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency
C Krendl, D Shaposhnikov, V Rishko, C Ori, C Ziegenhain, S Sass, ...
Proceedings of the National Academy of Sciences 114 (45), E9579-E9588, 2017
Niche WNT5A regulates the actin cytoskeleton during regeneration of hematopoietic stem cells
C Schreck, R Istvánffy, C Ziegenhain, T Sippenauer, F Ruf, L Henkel, ...
Journal of experimental medicine 214 (1), 165-181, 2017
A new model for post-integration latency in macroglial cells to study HIV-1 reservoirs of the brain
M Schneider, B Tigges, M Meggendorfer, M Helfer, C Ziegenhain, ...
Aids 29 (10), 1147-1159, 2015
Altered social behavior in mice carrying a cortical Foxp2 deletion
VP Medvedeva, MA Rieger, B Vieth, C Mombereau, C Ziegenhain, ...
Human molecular genetics 28 (5), 701-717, 2019
Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa
ET Granato, C Ziegenhain, RL Marvig, R Kümmerli
The ISME journal 12 (12), 2907-2918, 2018
Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals
CB Mulholland, A Nishiyama, J Ryan, R Nakamura, M Yiğit, IM Glück, ...
Nature communications 11 (1), 1-24, 2020
Actin stabilizing compounds show specific biological effects due to their binding mode
S Wang, AH Crevenna, I Ugur, A Marion, I Antes, U Kazmaier, M Hoyer, ...
Scientific reports 9 (1), 1-17, 2019
Micropatterning as a tool to identify regulatory triggers and kinetics of actin-mediated endothelial mechanosensing
FA Gegenfurtner, B Jahn, H Wagner, C Ziegenhain, W Enard, ...
Journal of cell science 131 (10), jcs212886, 2018
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Artigos 1–20