Isabel Rocha
Isabel Rocha
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Cited by
Cited by
Evolutionary programming as a platform for in silico metabolic engineering
KR Patil, I Rocha, J F÷rster, J Nielsen
BMC bioinformatics 6, 1-12, 2005
OptFlux: an open-source software platform for in silico metabolic engineering
I Rocha, P Maia, P Evangelista, P Vilaša, S Soares, JP Pinto, J Nielsen, ...
BMC systems biology 4, 1-12, 2010
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
Modeling formalisms in systems biology
D Machado, RS Costa, M Rocha, EC Ferreira, B Tidor, I Rocha
AMB express 1, 1-14, 2011
Galacto-oligosaccharides production during lactose hydrolysis by free Aspergillus oryzae β-galactosidase and immobilized on magnetic polysiloxane-polyvinyl alcohol
DFM Neri, VM BalcŃo, RS Costa, ICAP Rocha, EMFC Ferreira, ...
Food Chemistry 115 (1), 92-99, 2009
Reconstructing genome-scale metabolic models with merlin
O Dias, M Rocha, EC Ferreira, I Rocha
Nucleic acids research 43 (8), 3899-3910, 2015
Virtual laboratories in (bio) chemical engineering education
L Domingues, I Rocha, F Dourado, M Alves, EC Ferreira
Education for chemical engineers 5 (2), e22-e27, 2010
In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories
P Maia, M Rocha, I Rocha
Microbiology and Molecular Biology Reviews 80 (1), 45-67, 2016
Natural computation meta-heuristics for the in silico optimization of microbial strains
M Rocha, P Maia, R Mendes, JP Pinto, EC Ferreira, J Nielsen, KR Patil, ...
BMC bioinformatics 9, 1-16, 2008
Metabolic responses to recombinant bioprocesses in Escherichia coli
S Carneiro, EC Ferreira, I Rocha
Journal of biotechnology 164 (3), 396-408, 2013
New improved method for fructooligosaccharides production by Aureobasidium pullulans
A Dominguez, C Nobre, LR Rodrigues, AM Peres, D Torres, I Rocha, ...
Carbohydrate Polymers 89 (4), 1174-1179, 2012
Integration of biomass formulations of genome-scale metabolic models with experimental data reveals universally essential cofactors in prokaryotes
JC Xavier, KR Patil, I Rocha
Metabolic engineering 39, 200-208, 2017
Design and application of genome-scale reconstructed metabolic models
I Rocha, J F÷rster, J Nielsen
Microbial Gene Essentiality: Protocols and Bioinformatics, 409-431, 2008
Comparison of adsorption equilibrium of fructose, glucose and sucrose on potassium gel-type and macroporous sodium ion-exchange resins
C Nobre, MJ Santos, A Dominguez, D Torres, O Rocha, AM Peres, ...
Analytica Chimica Acta 654 (1), 71-76, 2009
Ecological modelling approaches for predicting emergent properties in microbial communities
NI van den Berg, D Machado, S Santos, I Rocha, J Chacˇn, W Harcombe, ...
Nature ecology & evolution 6 (7), 855-865, 2022
Optimization of fed-batch fermentation processes with bio-inspired algorithms
M Rocha, R Mendes, O Rocha, I Rocha, EC Ferreira
Expert Systems with Applications 41 (5), 2186-2195, 2014
Systems biology perspectives on minimal and simpler cells
JC Xavier, KR Patil, I Rocha
Microbiology and Molecular Biology Reviews 78 (3), 487-509, 2014
Random sampling of elementary flux modes in large-scale metabolic networks
D Machado, Z Soons, KR Patil, EC Ferreira, I Rocha
Bioinformatics 28 (18), i515-i521, 2012
Genome-scale modeling of yeast: chronology, applications and critical perspectives
H Lopes, I Rocha
FEMS yeast research 17 (5), fox050, 2017
@ Note: a workbench for biomedical text mining
A Lourenšo, R Carreira, S Carneiro, P Maia, D Glez-Pena, ...
Journal of biomedical informatics 42 (4), 710-720, 2009
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