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José Melo-Ferreira
José Melo-Ferreira
Group Leader, Centro de Investigação em Biodiversidade e Recursos Genéticos - CIBIO
Email confirmado em cibio.up.pt - Página inicial
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Invasion from the cold past: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia
J MELO‐FERREIRA, P Boursot, F Suchentrunk, N Ferrand, PC Alves
Molecular Ecology 14 (8), 2459-2464, 2005
2542005
Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares
MR Jones, LS Mills, PC Alves, CM Callahan, JM Alves, DJR Lafferty, ...
Science 360 (6395), 1355-1358, 2018
2462018
Genetic basis for red coloration in birds
RJ Lopes, JD Johnson, MB Toomey, MS Ferreira, PM Araujo, ...
Current Biology 26 (11), 1427-1434, 2016
2382016
Reference-free population genomics from next-generation transcriptome data and the vertebrate–invertebrate gap
P Gayral, J Melo-Ferreira, S Glémin, N Bierne, M Carneiro, B Nabholz, ...
PLoS genetics 9 (4), e1003457, 2013
1862013
Reference‐free transcriptome assembly in non‐model animals from next‐generation sequencing data
V Cahais, P Gayral, G Tsagkogeorga, J MELO‐FERREIRA, ...
Molecular ecology resources 12 (5), 834-845, 2012
1762012
The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus
PC Alves, J Melo-Ferreira, H Freitas, P Boursot
Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008
1532008
The era of reference genomes in conservation genomics
G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ...
Trends in Ecology & Evolution 37 (3), 197-202, 2022
1522022
Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world?
M Zimova, K Hackländer, JM Good, J Melo‐Ferreira, PC Alves, LS Mills
Biological Reviews 93 (3), 1478-1498, 2018
1492018
The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula
J MELO‐FERREIRA, P Boursot, E Randi, A Kryukov, F Suchentrunk, ...
Molecular Ecology 16 (3), 605-618, 2007
1402007
Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations
J Melo-Ferreira, P Boursot, M Carneiro, PJ Esteves, L Farelo, PC Alves
Systematic biology 61 (3), 367-381, 2012
1302012
Winter color polymorphisms identify global hot spots for evolutionary rescue from climate change
LS Mills, EV Bragina, AV Kumar, M Zimova, DJR Lafferty, J Feltner, ...
Science 359 (6379), 1033-1036, 2018
1102018
The genomic architecture of population divergence between subspecies of the European rabbit
M Carneiro, FW Albert, S Afonso, RJ Pereira, H Burbano, R Campos, ...
PLoS genetics 10 (8), e1003519, 2014
1022014
The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression
J Melo-Ferreira, J Vilela, MM Fonseca, RR da Fonseca, P Boursot, ...
Genome biology and evolution 6 (4), 886-896, 2014
1012014
The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes
J MELO‐FERREIRA, PC Alves, H Freitas, N Ferrand, P Boursot
Molecular Ecology 18 (12), 2643-2658, 2009
922009
Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome
M Carneiro, FW Albert, J Melo-Ferreira, N Galtier, P Gayral, ...
Molecular biology and evolution 29 (7), 1837-1849, 2012
892012
The genomic impact of historical hybridization with massive mitochondrial DNA introgression
FA Seixas, P Boursot, J Melo-Ferreira
Genome biology 19 (1), 91, 2018
872018
Advances in Ecological Speciation: an integrative approach
R Faria, S Renaut, J Galindo, C Pinho, J Melo‐Ferreira, M Melo, F Jones, ...
Molecular ecology 23 (3), 513-521, 2014
842014
Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia
J Paupério, JS Herman, J Melo‐Ferreira, M Jaarola, PC Alves, JB Searle
Molecular ecology 21 (24), 6015-6032, 2012
762012
How genomics can help biodiversity conservation
K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ...
Trends in genetics 39 (7), 545-559, 2023
722023
Parapatric species and the implications for climate change studies: a case study on hares in Europe
P Acevedo, A Jiménez‐Valverde, J Melo‐Ferreira, R Real, PC Alves
Global Change Biology 18 (5), 1509-1519, 2012
672012
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