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Berend Snel
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Comparative assessment of large-scale data sets of protein–protein interactions
C Von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
Nature 417 (6887), 399-403, 2002
30542002
STRING: a database of predicted functional associations between proteins
C Mering, M Huynen, D Jaeggi, S Schmidt, P Bork, B Snel
Nucleic acids research 31 (1), 258-261, 2003
27002003
STRING: known and predicted protein–protein associations, integrated and transferred across organisms
C Von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, ...
Nucleic acids research 33 (suppl_1), D433-D437, 2005
20262005
Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli, T Doerks, C Von Mering, CJ Creevey, B Snel, P Bork
science 311 (5765), 1283-1287, 2006
18752006
Deciphering the evolution and metabolism of an anammox bacterium from a community genome.
M Strous, E Pelletier, S Mangenot, T Rattei, A Lehner, MW Taylor, M Horn, ...
Nature 440 (7085), 790-794, 2006
1508*2006
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
B Snel, G Lehmann, P Bork, MA Huynen
Nucleic acids research 28 (18), 3442-3444, 2000
13802000
Conservation of gene order: a fingerprint of proteins that physically interact
T Dandekar, B Snel, M Huynen, P Bork
Trends in biochemical sciences 23 (9), 324-328, 1998
13751998
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
MA Schell, M Karmirantzou, B Snel, D Vilanova, B Berger, G Pessi, ...
Proceedings of the National Academy of Sciences 99 (22), 14422-14427, 2002
12222002
Genome phylogeny based on gene content
B Snel, P Bork, MA Huynen
Nature genetics 21 (1), 108-110, 1999
8351999
STRING 7—recent developments in the integration and prediction of protein interactions
C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ...
Nucleic acids research 35 (suppl_1), D358-D362, 2007
8142007
Predicting disease genes using protein–protein interactions
M Oti, B Snel, MA Huynen, HG Brunner
Journal of medical genetics 43 (8), 691-698, 2006
6612006
Predicting protein function by genomic context: quantitative evaluation and qualitative inferences
M Huynen, B Snel, W Lathe, P Bork
Genome research 10 (8), 1204-1210, 2000
6232000
The Arabidopsis bZIP transcription factor family—an update
W Dröge-Laser, BL Snoek, B Snel, C Weiste
Current opinion in plant biology 45, 36-49, 2018
4512018
Genomes in flux: the evolution of archaeal and proteobacterial gene content
B Snel, P Bork, MA Huynen
Genome research 12 (1), 17-25, 2002
4492002
Pathway alignment: application to the comparative analysis of glycolytic enzymes
T Dandekar, S Schuster, B Snel, M Huynen, P Bork
Biochemical Journal 343 (1), 115-124, 1999
3641999
Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors
P Kemmeren, K Sameith, LAL Van De Pasch, JJ Benschop, TL Lenstra, ...
Cell 157 (3), 740-752, 2014
3422014
The R-spondin protein family
WBM De Lau, B Snel, HC Clevers
Genome biology 13, 1-10, 2012
3342012
The identification of functional modules from the genomic association of genes
B Snel, P Bork, MA Huynen
Proceedings of the National Academy of Sciences 99 (9), 5890-5895, 2002
3282002
The yeast coexpression network has a small‐world, scale‐free architecture and can be explained by a simple model
V Van Noort, B Snel, MA Huynen
EMBO reports 5 (3), 280-284, 2004
3202004
Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames
T Dandekar, M Huynen, JT Regula, B Ueberle, CU Zimmermann, ...
Nucleic acids research 28 (17), 3278-3288, 2000
3142000
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