| Dynamics of Pseudomonas aeruginosa genome evolution K Mathee, G Narasimhan, C Valdes, X Qiu, JM Matewish, M Koehrsen, ... Proceedings of the National Academy of Sciences 105 (8), 3100-3105, 2008 | 647 | 2008 |
| Existing and potential statistical and computational approaches for the analysis of 3D CT images of plant roots Z Xu, C Valdes, J Clarke Agronomy 8 (5), 71, 2018 | 34 | 2018 |
| Time series modeling of cell cycle exit identifies Brd4 dependent regulation of cerebellar neurogenesis C Penas, ME Maloof, V Stathias, J Long, SK Tan, J Mier, Y Fang, ... Nature communications 10 (1), 3028, 2019 | 30 | 2019 |
| Identification of BRAF 3'UTR isoforms in melanoma A Marranci, A Tuccoli, M Vitiello, E Mercoledi, S Sarti, S Lubrano, ... The Journal of investigative dermatology 135 (6), 1694-1697, 2015 | 14 | 2015 |
| Large scale microbiome profiling in the cloud C Valdes, V Stebliankin, G Narasimhan Bioinformatics 35 (14), i13-i22, 2019 | 10 | 2019 |
| Methods to detect transcribed pseudogenes: RNA-Seq discovery allows learning through features C Valdes, E Capobianco Pseudogenes: Functions and Protocols, 157-183, 2014 | 9 | 2014 |
| Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays C Valdes, P Seo, N Tsinoremas, J Clarke Journal of clinical bioinformatics 3, 1-17, 2013 | 6 | 2013 |
| A Bayes testing approach to metagenomic profiling in bacteria B Clarke, C Valdes, A Dobra, J Clarke Statistics and its Interface 8 (2), 173-185, 2015 | 5 | 2015 |
| GenSensor Suite: A Web‐Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation M Gosink, S Khuri, C Valdes, Z Jiang, NF Tsinoremas Advances in bioinformatics 2011 (1), 271563, 2011 | 5 | 2011 |
| Novel approach for microbiome analysis using bacterial replication rates and causal inference with applications V Stebliankin, M Sazal, C Valdes, K Mathee, G Narasimhan bioRxiv, 2020.05. 21.108514, 2020 | 4 | 2020 |
| Microbiome maps: Hilbert curve visualizations of metagenomic profiles C Valdes, V Stebliankin, D Ruiz-Perez, JI Park, H Lee, G Narasimhan Frontiers in Bioinformatics 3, 1154588, 2023 | 3 | 2023 |
| Ensemble modeling approach targeting heterogeneous RNA-Seq data: application to melanoma pseudogenes E Capobianco, C Valdes, S Sarti, Z Jiang, L Poliseno, NF Tsinoremas Scientific reports 7 (1), 17344, 2017 | 3 | 2017 |
| A novel approach for combining the metagenome, metaresistome, metareplicome and causal inference to determine the microbes and their antibiotic resistance gene repertoire that … V Stebliankin, M Sazal, C Valdes, K Mathee, G Narasimhan Microbial Genomics 8 (12), 000899, 2022 | 2 | 2022 |
| Modeling association in microbial communities with clique loglinear models A Dobra, C Valdes, D Ajdic, B Clarke, J Clarke The Annals of Applied Statistics 13 (2), 931-957, 2019 | 2 | 2019 |
| Pseudogenes L Poliseno Methods in Molecular Biology Series, 2014 | 2 | 2014 |
| Exp4-dfdc: A non-stochastic multi-armed bandit for cache replacement F Yusuf, C Valdes, V Stebliankin, G Vietri, G Narasimhan arXiv preprint arXiv:2009.11330, 2020 | 1 | 2020 |
| Detecting bacterial genomes in a metagenomic sample using NGS reads C Valdes, M Brennan, B Clarke, J Clarke Statistics and its Interface 8 (4), 477-494, 2015 | 1 | 2015 |
| Statistics and Its Interface Y Liu, P Song, H Zhang, H Zou, N Mesue, T Nummi, J Pan, H Liang, Y Yu, ... | 1 | 2009 |
| A Volumetric Segmentation Method for Learning Structural Representations of Plant Roots in 3D X-Ray CT Scans C Valdes, A Iyer-Pascuzzi, V Meline, J Claußen, S Gerth, J Clarke Authorea Preprints, 2022 | | 2022 |
| Three Essays on Trade Policy in a Multi-Country World E Valdes | | 2022 |
