| The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ... Nucleic acids research 34 (suppl 1), D446-D451, 2006 | 583 | 2006 |
| PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço BMC bioinformatics 13 (1), 1-10, 2012 | 458 | 2012 |
| The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ... Nucleic acids research 42 (D1), D161-D166, 2014 | 263 | 2014 |
| YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ... Nucleic acids research 39 (suppl 1), D136-D140, 2011 | 224 | 2011 |
| YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ... Nucleic acids research 36 (suppl 1), D132-D136, 2008 | 194 | 2008 |
| Logical modeling and dynamical analysis of cellular networks W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ... Frontiers in genetics 7, 94, 2016 | 173 | 2016 |
| SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7 (1), 135, 2013 | 151 | 2013 |
| YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, M Palma, C Costa, CP Godinho, P Pais, ... Nucleic acids research 46 (D1), D348-D353, 2018 | 147 | 2018 |
| Temporal logic patterns for querying dynamic models of cellular interaction networks PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong Bioinformatics 24 (16), i227-i233, 2008 | 108 | 2008 |
| YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts PT Monteiro, J Oliveira, P Pais, M Antunes, M Palma, M Cavalheiro, ... Nucleic Acids Research 48 (D1), D642-D649, 2020 | 93 | 2020 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 84 | 2020 |
| Model checking to assess T-helper cell plasticity W Abou-Jaoudé, PT Monteiro, A Naldi, M Grandclaudon, V Soumelis, ... Frontiers in bioengineering and biotechnology 2, 86, 2015 | 84 | 2015 |
| Efficient parameter search for qualitative models of regulatory networks using symbolic model checking G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong Bioinformatics 26 (18), i603-i610, 2010 | 82 | 2010 |
| Dynamical modeling and analysis of large cellular regulatory networks D Bérenguier, C Chaouiya, PT Monteiro, A Naldi, E Remy, D Thieffry, ... Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 025114, 2013 | 72 | 2013 |
| Cooperative development of logical modelling standards and tools with CoLoMoTo A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ... Bioinformatics 31 (7), 1154-1159, 2015 | 65 | 2015 |
| Logical modeling and analysis of cellular regulatory networks with ginsim 3.0 A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 646, 2018 | 60 | 2018 |
| The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 680, 2018 | 50 | 2018 |
| Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks G Batt, B Besson, H de Jong, E Dumas, J Geiselmann, R Monte, ... Bacterial Molecular Networks, 439-462, 2012 | 39 | 2012 |
| The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts PT Monteiro, P Pais, C Costa, S Manna, I Sá-Correia, MC Teixeira Nucleic acids research 45 (D1), D597-D603, 2017 | 36 | 2017 |
| Spanning edge betweenness AS Teixeira, PT Monteiro, JA Carriço, M Ramirez, AP Francisco Workshop on mining and learning with graphs 24, 27-31, 2013 | 31 | 2013 |
Claudine ChaouiyaI2M UMR 7373, Aix Marseille University (France)Verified email at univ-amu.fr
