| CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ... Public Library of Science 8 (10), e1002708, 2012 | 1251 | 2012 |
| PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ... PLoS computational biology 10 (1), e1003440, 2014 | 815 | 2014 |
| Strategies for stabilization of enzymes in organic solvents V Stepankova, S Bidmanova, T Koudelakova, Z Prokop, R Chaloupkova, ... Acs Catalysis 3 (12), 2823-2836, 2013 | 662 | 2013 |
| CAVER: a new tool to explore routes from protein clefts, pockets and cavities M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský BMC bioinformatics 7, 1-9, 2006 | 647 | 2006 |
| Machine learning in enzyme engineering S Mazurenko, Z Prokop, J Damborsky ACS Catalysis 10 (2), 1210-1223, 2019 | 373 | 2019 |
| Bioremediation 3.0: engineering pollutant-removing bacteria in the times of systemic biology P Dvořák, PI Nikel, J Damborský, V de Lorenzo Biotechnology advances 35 (7), 845-866, 2017 | 353 | 2017 |
| CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018 | 326 | 2018 |
| Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ... Nature chemical biology 5 (10), 727-733, 2009 | 323 | 2009 |
| Gates of enzymes A Gora, J Brezovsky, J Damborsky Chemical reviews 113 (8), 5871-5923, 2013 | 284 | 2013 |
| Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway P Dvorak, L Chrast, PI Nikel, R Fedr, K Soucek, M Sedlackova, ... Microbial cell factories 14, 1-15, 2015 | 273 | 2015 |
| Computational tools for designing and engineering enzymes J Damborsky, J Brezovsky Current opinion in chemical biology 19, 8-16, 2014 | 260 | 2014 |
| HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information L Sumbalova, J Stourac, T Martinek, D Bednar, J Damborsky Nucleic Acids Research 46 (W1), W356-W362, 2018 | 253 | 2018 |
| HotSpot Wizard: a web server for identification of hot spots in protein engineering A Pavelka, E Chovancova, J Damborsky Nucleic acids research 37 (suppl_2), W376-W383, 2009 | 240 | 2009 |
| Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport J Stourac, O Vavra, P Kokkonen, J Filipovic, G Pinto, J Brezovsky, ... Nucleic acids research 47 (W1), W414-W422, 2019 | 211 | 2019 |
| Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26, J Marek, J Vévodová, IK Smatanová, Y Nagata, LA Svensson, J Newman, ... Biochemistry 39 (46), 14082-14086, 2000 | 210 | 2000 |
| Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel R Chaloupková, J Sýkorová, Z Prokop, A Jesenská, M Monincová, ... Journal of Biological Chemistry 278 (52), 52622-52628, 2003 | 199 | 2003 |
| PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský PLoS computational biology 12 (5), e1004962, 2016 | 198 | 2016 |
| Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26 Y Nagata, K Miyauchi, J Damborsky, K Manova, A Ansorgova, M Takagi Applied and Environmental Microbiology 63 (9), 3707-3710, 1997 | 198 | 1997 |
| Haloalkane dehalogenases: biotechnological applications T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ... Biotechnology journal 8 (1), 32-45, 2013 | 191 | 2013 |
| Biodegradation of 1, 2, 3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene T Bosma, J Damborský, G Stucki, DB Janssen Applied and environmental microbiology 68 (7), 3582-3587, 2002 | 191 | 2002 |
Jan BrezovskyFaculty of Biology, Adam Mickiewicz University in PoznanVerified email at amu.edu.pl
