| REVIGO summarizes and visualizes long lists of gene ontology terms F Supek, M Bošnjak, N Škunca, T Šmuc PloS one 6 (7), e21800, 2011 | 6198 | 2011 |
| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1111 | 2013 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 437 | 2016 |
| Inferring horizontal gene transfer M Ravenhall, N Škunca, F Lassalle, C Dessimoz PLoS computational biology 11 (5), e1004095, 2015 | 288 | 2015 |
| The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015 | 244 | 2015 |
| The what, where, how and why of gene ontology—a primer for bioinformaticians L Du Plessis, N Škunca, C Dessimoz Briefings in bioinformatics 12 (6), 723-735, 2011 | 216 | 2011 |
| A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms B Egger, F Lapraz, B Tomiczek, S Müller, C Dessimoz, J Girstmair, ... Current Biology 25 (10), 1347-1353, 2015 | 204 | 2015 |
| The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease X Peng, J Alföldi, K Gori, AJ Eisfeld, SR Tyler, J Tisoncik-Go, D Brawand, ... Nature biotechnology 32 (12), 1250-1255, 2014 | 144 | 2014 |
| Quality of computationally inferred gene ontology annotations N Škunca, A Altenhoff, C Dessimoz PLoS computational biology 8 (5), e1002533, 2012 | 127 | 2012 |
| The gene ontology handbook C Dessimoz, N Škunca Springer Nature, 2017 | 103 | 2017 |
| Primer on the gene ontology P Gaudet, N Škunca, JC Hu, C Dessimoz The Gene Ontology Handbook, 25-37, 2017 | 103 | 2017 |
| Translational selection is ubiquitous in prokaryotes F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc PLoS genetics 6 (6), e1001004, 2010 | 93 | 2010 |
| CAFA and the open world of protein function predictions C Dessimoz, N Škunca, PD Thomas Trends in Genetics 29 (11), 609-610, 2013 | 64 | 2013 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek PLoS computational biology 9 (1), e1002852, 2013 | 51 | 2013 |
| Polyketide synthase genes and the natural products potential of Dictyostelium discoideum J Zucko, N Skunca, T Curk, B Zupan, PF Long, J Cullum, RH Kessin, ... Bioinformatics 23 (19), 2543-2549, 2007 | 48 | 2007 |
| The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations FB Bastian, MC Chibucos, P Gaudet, M Giglio, GL Holliday, H Huang, ... Database 2015, bav043, 2015 | 43 | 2015 |
| Phylogenetic profiling: how much input data is enough? N Škunca, C Dessimoz PloS one 10 (2), e0114701, 2015 | 39 | 2015 |
| Visualizing go annotations F Supek, N Škunca The Gene Ontology Handbook, 207-220, 2017 | 19 | 2017 |
| Evaluating computational gene ontology annotations N Škunca, RJ Roberts, M Steffen The Gene Ontology Handbook, 97-109, 2017 | 14 | 2017 |
Fran SupekGenome Data Science lab PI, BRIC / University of Copenhagen professor, IRB Barcelona Group LeaderVerified email at irb.hr
