| Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures R Kolodny, P Koehl, M Levitt Journal of molecular biology 346 (4), 1173-1188, 2005 | 368 | 2005 |
| Small libraries of protein fragments model native protein structures accurately R Kolodny, P Koehl, L Guibas, M Levitt Journal of molecular biology 323 (2), 297-307, 2002 | 257 | 2002 |
| Potential antigenic cross-reactivity between severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and dengue viruses Y Lustig, S Keler, R Kolodny, N Ben-Tal, D Atias-Varon, E Shlush, ... Clinical Infectious Diseases 73 (7), e2444-e2449, 2021 | 205 | 2021 |
| Protein structure comparison: implications for the nature of ‘fold space’, and structure and function prediction R Kolodny, D Petrey, B Honig Current opinion in structural biology 16 (3), 393-398, 2006 | 190 | 2006 |
| Approximate protein structural alignment in polynomial time R Kolodny, N Linial Proceedings of the National Academy of Sciences 101 (33), 12201-12206, 2004 | 161 | 2004 |
| Sequence‐similar, structure‐dissimilar protein pairs in the PDB M Kosloff, R Kolodny Proteins: Structure, Function, and Bioinformatics 71 (2), 891-902, 2008 | 159 | 2008 |
| FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately I Budowski-Tal, Y Nov, R Kolodny Proceedings of the National Academy of Sciences 107 (8), 3481-3486, 2010 | 134 | 2010 |
| Inverse kinematics in biology: the protein loop closure problem R Kolodny, L Guibas, M Levitt, P Koehl The International Journal of Robotics Research 24 (2-3), 151-163, 2005 | 119 | 2005 |
| On the universe of protein folds R Kolodny, L Pereyaslavets, AO Samson, M Levitt Annual review of biophysics 42 (1), 559-582, 2013 | 99 | 2013 |
| Global view of the protein universe S Nepomnyachiy, N Ben-Tal, R Kolodny Proceedings of the National Academy of Sciences 111 (32), 11691-11696, 2014 | 81 | 2014 |
| Maps of protein structure space reveal a fundamental relationship between protein structure and function M Osadchy, R Kolodny Proceedings of the National Academy of Sciences 108 (30), 12301-12306, 2011 | 78 | 2011 |
| On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment LM Longo, J Jabłońska, P Vyas, M Kanade, R Kolodny, N Ben-Tal, ... Elife 9, e64415, 2020 | 75 | 2020 |
| Complex evolutionary footprints revealed in an analysis of reused protein segments of diverse lengths S Nepomnyachiy, N Ben-Tal, R Kolodny Proceedings of the National Academy of Sciences 114 (44), 11703-11708, 2017 | 69 | 2017 |
| Using an alignment of fragment strings for comparing protein structures I Friedberg, T Harder, R Kolodny, E Sitbon, Z Li, A Godzik Bioinformatics 23 (2), e219-e224, 2007 | 56 | 2007 |
| Bridging themes: short protein segments found in different architectures R Kolodny, S Nepomnyachiy, DS Tawfik, N Ben-Tal Molecular biology and evolution 38 (6), 2191-2208, 2021 | 50 | 2021 |
| Protein decoy assembly using short fragments under geometric constraints R Kolodny, M Levitt Biopolymers: Original Research on Biomolecules 68 (3), 278-285, 2003 | 38 | 2003 |
| On the evolution of protein–adenine binding A Narunsky, A Kessel, R Solan, V Alva, R Kolodny, N Ben-Tal Proceedings of the National Academy of Sciences 117 (9), 4701-4709, 2020 | 31 | 2020 |
| Evolutionary pathways of repeat protein topology in bacterial outer membrane proteins MW Franklin, S Nepomnyachyi, R Feehan, N Ben-Tal, R Kolodny, ... Elife 7, e40308, 2018 | 29 | 2018 |
| Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons Y Bilu, PK Agarwal, R Kolodny IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (4), 408-422, 2006 | 28 | 2006 |
| CyToStruct: augmenting the network visualization of cytoscape with the power of molecular viewers S Nepomnyachiy, N Ben-Tal, R Kolodny Structure 23 (5), 941-948, 2015 | 25 | 2015 |
Nir Ben-TalProfessor of Biochemistry and Molecular Biology, The George S. Wise Faculty of Life Sciences, TelVerified email at ashtoret.tau.ac.il
