| LinkedOmics: analyzing multi-omics data within and across 32 cancer types SV Vasaikar, P Straub, J Wang, B Zhang Nucleic acids research 46 (D1), D956-D963, 2018 | 1373 | 2018 |
| WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit J Wang, S Vasaikar, Z Shi, M Greer, B Zhang Nucleic acids research 45 (W1), W130-W137, 2017 | 897 | 2017 |
| Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 451 | 2019 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 328 | 2019 |
| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 319 | 2020 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 227 | 2021 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 226 | 2020 |
| A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 100 | 2021 |
| Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing AP Deshmukh, SV Vasaikar, K Tomczak, S Tripathi, P Den Hollander, ... Proceedings of the National Academy of Sciences 118 (19), e2102050118, 2021 | 90 | 2021 |
| EMTome: A resource for pan-cancer analysis of epithelial-mesenchymal transition genes and signatures SV Vasaikar, AP Deshmukh, P den Hollander, S Addanki, NA Kuburich, ... British journal of cancer 124 (1), 259-269, 2021 | 77 | 2021 |
| EPHB2 carried on small extracellular vesicles induces tumor angiogenesis via activation of ephrin reverse signaling S Sato, S Vasaikar, A Eskaros, Y Kim, JS Lewis, B Zhang, A Zijlstra, ... JCI insight 4 (23), 2019 | 77 | 2019 |
| Microscaled proteogenomic methods for precision oncology S Satpathy, EJ Jaehnig, K Krug, BJ Kim, AB Saltzman, DW Chan, ... Nature communications 11 (1), 532, 2020 | 73 | 2020 |
| Colorectal cancer cell line proteomes are representative of primary tumors and predict drug sensitivity J Wang, D Mouradov, X Wang, RN Jorissen, MC Chambers, ... Gastroenterology 153 (4), 1082-1095, 2017 | 61 | 2017 |
| Mechanisms of loss of functions of human angiogenin variants implicated in amyotrophic lateral sclerosis AK Padhi, H Kumar, SV Vasaikar, B Jayaram, J Gomes PLoS One 7 (2), e32479, 2012 | 58 | 2012 |
| Immune checkpoint profiles in luminal B breast cancer (Alliance) M Anurag, M Zhu, C Huang, S Vasaikar, J Wang, J Hoog, S Burugu, ... JNCI: Journal of the National Cancer Institute 112 (7), 737-746, 2020 | 57 | 2020 |
| Neurofibromin is an estrogen receptor-α transcriptional co-repressor in breast cancer ZY Zheng, M Anurag, JT Lei, J Cao, P Singh, J Peng, H Kennedy, ... Cancer cell 37 (3), 387-402. e7, 2020 | 51 | 2020 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 180 (1), 207, 2020 | 48 | 2020 |
| NeuroDNet-an open source platform for constructing and analyzing neurodegenerative disease networks SV Vasaikar, AK Padhi, B Jayaram, J Gomes BMC neuroscience 14 (1), 1-13, 2013 | 35 | 2013 |
| CpG dinucleotide frequencies reveal the role of host methylation capabilities in parvovirus evolution M Upadhyay, J Samal, M Kandpal, S Vasaikar, B Biswas, J Gomes, ... Journal of virology 87 (24), 13816-13824, 2013 | 34 | 2013 |
| A CTC-cluster-specific signature derived from OMICS analysis of patient-derived xenograft tumors predicts outcomes in basal-like breast cancer H Thangavel, CD Angelis, S Vasaikar, R Bhat, MK Jolly, C Nagi, ... Journal of clinical medicine 8 (11), 1772, 2019 | 31 | 2019 |
Bing ZhangProfessor of Molecular and Human Genetics, Baylor College of MedicineVerified email at bcm.edu
