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Yu-Wei Wu
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
YW Wu, BA Simmons, SW Singer
Bioinformatics 32 (4), 605-607, 2016
15882016
Critical Assessment of Metagenome Interpretation [mdash] a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7172017
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer
Microbiome 2, 26, 2014
6042014
Diverse CRISPRs evolving in human microbiomes
M Rho, YW Wu, H Tang, TG Doak, Y Ye
PLoS genetics 8 (6), e1002441, 2012
2222012
A novel abundance-based algorithm for binning metagenomic sequences using l-tuples
YW Wu, Y Ye
Journal of Computational Biology 18 (3), 523-534, 2011
2172011
The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
SM Chaw, ACC Shih, D Wang, YW Wu, SM Liu
Molecular Biology and Evolution 25 (3), 603-615, 2008
1712008
Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution
SM Chaw, YC Liu, YW Wu, HY Wang, CYI Lin, CS Wu, HM Ke, LY Chang, ...
Nature Plants 5 (1), 63, 2019
1332019
Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
D Wang, YW Wu, ACC Shih, CS Wu, YN Wang, SM Chaw
Molecular biology and evolution 24 (9), 2040-2048, 2007
1112007
Association of Fecal and Plasma Levels of Short-Chain Fatty Acids With Gut Microbiota and Clinical Severity in Patients With Parkinson Disease
SJ Chen, CC Chen, HY Liao, YT Lin, YW Wu, JM Liou, MS Wu, CH Kuo, ...
Neurology 98 (8), e848-e858, 2022
992022
A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains
HL Her, YW Wu
Bioinformatics 34 (13), i89-i95, 2018
872018
Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage
J Hiras, YW Wu, SA Eichorst, BA Simmons, SW Singer
The ISME journal 10 (4), 833-845, 2016
692016
Comparison of Multivariable Logistic Regression and Other Machine Learning Algorithms for Prognostic Prediction Studies in Pregnancy Care: Systematic Review and Meta-Analysis
H Sufriyana, A Husnayain, YL Chen, CY Kuo, O Singh, TY Yeh, YW Wu, ...
JMIR Medical Informatics 8 (11), e16503, 2020
622020
ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes
YW Wu
BMC Genomics 19 (1), 921, 2018
562018
Identification and resolution of microdiversity through metagenomic sequencing of parallel consortia
WC Nelson, Y Maezato, YW Wu, MF Romine, SR Lindemann
Applied and environmental microbiology 82 (1), 255-267, 2016
552016
Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera
SH Yang, K Tandon, CY Lu, N Wada, CJ Shih, SSY Hsiao, WN Jane, ...
Microbiome 7 (1), 1-13, 2019
532019
Artificial intelligence-assisted prediction of preeclampsia: Development and external validation of a nationwide health insurance dataset of the BPJS Kesehatan in Indonesia
H Sufriyana, YW Wu, ECY Su
EBioMedicine 54, 102710, 2020
442020
Discovery of enzymes for toluene synthesis from anoxic microbial communities
HR Beller, AV Rodrigues, K Zargar, YW Wu, AK Saini, RM Saville, ...
Nature chemical biology 14 (5), 451-457, 2018
432018
Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery
WK Wu, S Panyod, PY Liu, CC Chen, HL Kao, HL Chuang, YH Chen, ...
Microbiome 8 (1), 1-17, 2020
422020
Microbial community structure and functional potential along a hypersaline gradient
JA Kimbrel, N Ballor, YW Wu, MM David, TC Hazen, BA Simmons, ...
Frontiers in Microbiology 9, 1492, 2018
412018
Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
X Liang, JM Whitham, EK Holwerda, X Shao, L Tian, YW Wu, V Lombard, ...
Biotechnology for biofuels 11 (1), 243, 2018
372018
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