| GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison FE Faisal*, K Newaz*, JL Chaney, J Li, SJ Emrich, PL Clark, T Milenković Scientific reports 7 (1), 1-15, 2017 | 41 | 2017 |
| Network-based protein structural classification K Newaz, M Ghalehnovi, A Rahnama, PJ Antsaklis, T Milenković Royal Society Open Science 7 (6), 191461, 2020 | 22 | 2020 |
| Graphlets in network science and computational biology K Newaz, T Milenković Analyzing network data in biology and medicine: an interdisciplinary …, 2019 | 11 | 2019 |
| Identification of major signaling pathways in prion disease progression using network analysis K Newaz, K Sriram, D Bera PLOS ONE 10 (12), e0144389, 2015 | 11 | 2015 |
| Improved supervised prediction of aging-related genes via weighted dynamic network analysis Q Li*, K Newaz*, T Milenković BMC Bioinformatics 22 (1), 1-26, 2021 | 9 | 2021 |
| Network analysis of synonymous codon usage K Newaz, G Wright, J Piland, J Li, PL Clark, SJ Emrich, T Milenković Bioinformatics 36 (19), 4876-4884, 2020 | 9 | 2020 |
| Weighted graphlets and deep neural networks for protein structure classification H Guo, K Newaz, S Emrich, T Milenkovic, J Li arXiv preprint arXiv:1910.02594, 2019 | 8 | 2019 |
| Inference of a dynamic aging-related biological subnetwork via network propagation K Newaz, T Milenković IEEE/ACM transactions on computational biology and bioinformatics 19 (2 …, 2020 | 7* | 2020 |
| Multi‐layer sequential network analysis improves protein 3D structural classification K Newaz, J Piland, PL Clark, SJ Emrich, J Li, T Milenković Proteins: Structure, Function, and Bioinformatics, 2022 | 5* | 2022 |
| Novel network science approaches for a better understanding of protein folding and human aging K Newaz University of Notre Dame, 2022 | 2 | 2022 |
| Towards future directions in data-integrative supervised prediction of human aging-related genes Q Li, K Newaz, T Milenković Bioinformatics Advances 2 (1), vbac081, 2022 | 1 | 2022 |
| The power and limits of predicting exon-exon interactions using protein 3D structures J Liebold, A Del Moral-Morales, K Manalastas-Cantos, O Tsoy, S Kurtz, ... bioRxiv, 2024.03. 01.582917, 2024 | | 2024 |
| Transcription factor prediction using protein 3D structures F Neuhaus, J Liebold, J Baumbach, K Newaz bioRxiv, 2024.03. 14.585054, 2024 | | 2024 |
| Network analysis of prion disease K Newaz, D Bera Indraprastha Institute of Information and Technology Delhi, 2015 | | 2015 |
Tijana MilenkovicUniversity of Notre DameEmail confirmado em nd.edu
