Thomas Sicheritz-Ponten

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	All	Since 2016
Citations	36992	22154
h-index	55	47
i10-index	96	83

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Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerified email at cpr.ku.dk
Simon RasmussenAssociate Professor, University of CopenhagenVerified email at cpr.ku.dk
Nikolaj Sorgenfrei BlomSenior Researcher, DTUVerified email at kt.dtu.dk
Ole LundTechnical University of DenmarkVerified email at cbs.dtu.dk
Salvatore CosentinoResearch Associate at Iwasaki lab., Dept. of Biological Sciences, The University of TokyoVerified email at bs.s.u-tokyo.ac.jp
Dhany SaputraPhD student, Center for Biological Sequence Analysis, Technical University of DenmarkVerified email at cbs.dtu.dk
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Peer BorkEMBLVerified email at embl.de
Martin L MillerCancer Research UK, Cambridge Institute, University of CambridgeVerified email at cruk.cam.ac.uk
Jeff BowmanAssistant Professor, Scripps Institution of OceanographyVerified email at ucsd.edu
Peter G. FosterNatural History Museum, LondonVerified email at nhm.ac.uk
Martin EmbleyProfessor of Molecular Evolution, Newcastle UniversityVerified email at ncl.ac.uk
Trudy M. WassenaarDirector of MMGCVerified email at mmgc.eu
Jessica C KissingerDistinguished Professor of Genetics, University ofVerified email at uga.edu
Mads BakUniversity of CopenhagenVerified email at regionh.dk
Niels TommerupProfessor in Medical Genetics, University of CopenhagenVerified email at sund.ku.dk
Henrik LeffersSenior Scientist, University of Copenhagen, Denmark. henrik@leffers.proVerified email at leffers.pro
Francisco RoquePwCVerified email at roque.com.pt
Oleg RevaUniversity of PretoriaVerified email at up.ac.za
Jane M CarltonSilver Professor; Professor of Biology, and Global Public Health, New York UniversityVerified email at nyu.edu

Thomas Sicheritz-Ponten

Professor in Computational Phage Biodiscovery, University of Copenhagen

Verified email at sund.ku.dk

Bioinformatics Supercomputing Artificial Intelligence in Life Science Genomics Metagenomics


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A human gut microbial gene catalogue established by metagenomic sequencing J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ... nature 464 (7285), 59-65, 2010	8766	2010
Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... nature 473 (7346), 174-180, 2011	5418	2011
Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013	2814	2013
The genome sequence of Rickettsia prowazekii and the origin of mitochondria SGE Andersson, A Zomorodipour, JO Andersson, T Sicheritz-Pontén, ... Nature 396 (6707), 133-140, 1998	1957	1998
Prediction of post‐translational glycosylation and phosphorylation of proteins from the amino acid sequence N Blom, T Sicheritz‐Pontén, R Gupta, S Gammeltoft, S Brunak Proteomics 4 (6), 1633-1649, 2004	1860	2004
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	1354	2014
Multilocus sequence typing of total-genome-sequenced bacteria MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ... Journal of clinical microbiology 50 (4), 1355-1361, 2012	1202	2012
Population genomics of bronze age Eurasia ME Allentoft, M Sikora, KG Sjögren, S Rasmussen, M Rasmussen, ... Nature 522 (7555), 167-172, 2015	1062	2015
The genome of the protist parasite Entamoeba histolytica B Loftus, I Anderson, R Davies, UCM Alsmark, J Samuelson, P Amedeo, ... Nature 433 (7028), 865-868, 2005	890	2005
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis JM Carlton, RP Hirt, JC Silva, AL Delcher, M Schatz, Q Zhao, JR Wortman, ... Science 315 (5809), 207-212, 2007	860	2007
Ancient human genome sequence of an extinct Palaeo-Eskimo M Rasmussen, Y Li, S Lindgreen, JS Pedersen, A Albrechtsen, I Moltke, ... Nature 463 (7282), 757-762, 2010	771	2010
An Aboriginal Australian genome reveals separate human dispersals into Asia M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ... Science 334 (6052), 94-98, 2011	690	2011
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ... Nature 499 (7456), 74-78, 2013	685	2013
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans M Raghavan, P Skoglund, KE Graf, M Metspalu, A Albrechtsen, I Moltke, ... Nature 505 (7481), 87-91, 2014	652	2014
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014	638	2014
The genome of a Late Pleistocene human from a Clovis burial site in western Montana M Rasmussen, SL Anzick, MR Waters, P Skoglund, M DeGiorgio, ... Nature 506 (7487), 225-229, 2014	446	2014
Linear motif atlas for phosphorylation-dependent signaling ML Miller, LJ Jensen, F Diella, C Jørgensen, M Tinti, L Li, M Hsiung, ... Science signaling 1 (35), ra2-ra2, 2008	429	2008
Phospho. ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins F Diella, S Cameron, C Gemünd, R Linding, A Via, B Kuster, ... BMC bioinformatics 5 (1), 1-5, 2004	401	2004
Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago S Rasmussen, ME Allentoft, K Nielsen, L Orlando, M Sikora, AG Pedersen, ... Cell 163 (3), 571-582, 2015	350	2015
Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples H Hasman, D Saputra, T Sicheritz-Ponten, O Lund, CA Svendsen, ... Journal of clinical microbiology 52 (1), 139-146, 2014	314	2014

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