Samuel K. Sheppard

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Ben PascoeUniversity of OxfordEmail confirmado em ndm.ox.ac.uk
Martin C. J. MaidenProfessor of Molecular Epidemiology, University of OxfordEmail confirmado em biology.ox.ac.uk
Guillaume MéricBaker Heart & Diabetes Institute, MelbourneEmail confirmado em baker.edu.au
Keith JolleyUniversity of OxfordEmail confirmado em biology.ox.ac.uk
Norval StrachanUniversity of AberdeenEmail confirmado em abdn.ac.uk
Matthew David HitchingsSenior Research OfficerEmail confirmado em swansea.ac.uk
Noel McCarthyProfessorEmail confirmado em warwick.ac.uk
Daniel FalushInstitute Pasteur ShanghaiEmail confirmado em ips.ac.cn
Evangelos MourkasResearcher in Infectious Diseases, Department of Medical Sciences, Uppsala UniversityEmail confirmado em uu.se
Frances CollesPostdoctoral researcher, University of OxfordEmail confirmado em biology.ox.ac.uk
Sion C. BaylissLecturer in Endemic, Epizootic and Emerging Pathogens. University of BristolEmail confirmado em bristol.ac.uk
E J FeilProfessor of Microbial EvolutionEmail confirmado em bath.ac.uk
Jessica CallandDepartment of Biostatistics and Epidemiology, Oslo University HospitalEmail confirmado em medisin.uio.no
Alison J CodyPost Doctoral Researcher, Department of Zoology, University of OxfordEmail confirmado em zoo.ox.ac.uk
Julian ParkhillUniversity of CambridgeEmail confirmado em cam.ac.uk
Xavier DidelotUniversity of WarwickEmail confirmado em warwick.ac.uk
Craig Thomas ParkerUSDAEmail confirmado em usda.gov
Daniel J WilsonUniversity of OxfordEmail confirmado em bdi.ox.ac.uk
Rory BowdenWalter and Eliza Hall Institute of Medical ResearchEmail confirmado em wehi.edu.au
David LloydBiosciences, Cardiff UniversityEmail confirmado em cf.ac.uk

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Samuel K. Sheppard

Department of Biology, Oxford University, UK

Email confirmado em biology.ox.ac.uk - Página inicial

Microbiology Genomics Ecology Evolution


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Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain KA Jolley, CM Bliss, JS Bennett, HB Bratcher, C Brehony, FM Colles, ... Microbiology 158 (4), 1005-1015, 2012	614	2012
Campylobacter Genotyping to Determine the Source of Human Infection SK Sheppard, JF Dallas, NJC Strachan, M MacRae, ND McCarthy, ... Clinical Infectious Diseases 48 (8), 1072-1078, 2009	492	2009
Advances in molecular ecology: tracking trophic links through predator–prey food‐webs SK Sheppard, JD Harwood Functional ecology 19 (5), 751-762, 2005	428	2005
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter SK Sheppard, X Didelot, G Meric, A Torralbo, KA Jolley, DJ Kelly, ... Proceedings of the national academy of sciences 110 (29), 11923-11927, 2013	343	2013
Detection of secondary predation by PCR analyses of the gut contents of invertebrate generalist predators SK Sheppard, J Bell, KD Sunderland, J Fenlon, D Skervin, ... Molecular Ecology 14 (14), 4461-4468, 2005	301	2005
Convergence of Campylobacter species: implications for bacterial evolution SK Sheppard, ND McCarthy, D Falush, MCJ Maiden Science 320 (5873), 237-239, 2008	289	2008
Population genomics of bacterial host adaptation SK Sheppard, DS Guttman, JR Fitzgerald Nature Reviews Genetics 19 (9), 549-565, 2018	244	2018
CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community TR Connor, NJ Loman, S Thompson, A Smith, J Southgate, R Poplawski, ... Microbial genomics 2 (9), e000086, 2016	209	2016
Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations A McNally, Y Oren, D Kelly, B Pascoe, S Dunn, T Sreecharan, M Vehkala, ... PLoS genetics 12 (9), e1006280, 2016	199	2016
Campylobacter genotypes from food animals, environmental sources and clinical disease in Scotland 2005/6 SK Sheppard, JF Dallas, M MacRae, ND McCarthy, EL Sproston, ... International journal of food microbiology 134 (1-2), 96-103, 2009	191	2009
The evolution of Campylobacter jejuni and Campylobacter coli SK Sheppard, MCJ Maiden Cold Spring Harbor perspectives in biology 7 (8), a018119, 2015	189	2015
Campylobacter epidemiology: a descriptive study reviewing 1 million cases in England and Wales between 1989 and 2011 GL Nichols, JF Richardson, SK Sheppard, C Lane, C Sarran BMJ open 2 (4), e001179, 2012	185	2012
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria SC Bayliss, HA Thorpe, NM Coyle, SK Sheppard, EJ Feil Gigascience 8 (10), giz119, 2019	176	2019
A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter SK Sheppard, KA Jolley, MCJ Maiden Genes 3 (2), 261-277, 2012	171	2012
Attribution of Campylobacter Infections in Northeast Scotland to Specific Sources by Use of Multilocus Sequence Typing NJC Strachan, FJ Gormley, O Rotariu, ID Ogden, G Miller, GM Dunn, ... The Journal of infectious diseases 199 (8), 1205-1208, 2009	166	2009
Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis G Meric, M Miragaia, M de Been, K Yahara, B Pascoe, L Mageiros, ... Genome biology and evolution 7 (5), 1313-1328, 2015	162	2015
Host Association of Campylobacter Genotypes Transcends Geographic Variation SK Sheppard, F Colles, J Richardson, AJ Cody, R Elson, A Lawson, ... Applied and Environmental Microbiology 76 (15), 5269-5277, 2010	161	2010
Progressive genome‐wide introgression in agricultural Campylobacter coli SK Sheppard, X Didelot, KA Jolley, AE Darling, B Pascoe, G Meric, ... Molecular ecology 22 (4), 1051-1064, 2013	157	2013
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis G Méric, L Mageiros, J Pensar, M Laabei, K Yahara, B Pascoe, N Kittiwan, ... Nature communications 9 (1), 5034, 2018	154	2018
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals SK Sheppard, L Cheng, G Meric, CPA De Haan, AK Llarena, P Marttinen, ... Molecular ecology 23 (10), 2442-2451, 2014	153	2014

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