Sebastian Böcker
Sebastian Böcker
Professor für Bioinformatik, FSU Jena
Verified email at - Homepage
TitleCited byYear
Searching molecular structure databases with tandem mass spectra using CSI: FingerID
K Dührkop, H Shen, M Meusel, J Rousu, S Böcker
Proceedings of the National Academy of Sciences 112 (41), 12580-12585, 2015
SIRIUS: decomposing isotope patterns for metabolite identification
S Böcker, MC Letzel, Z Lipták, A Pervukhin
Bioinformatics 25 (2), 218-224, 2009
Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: a tool for rapid bacterial identification
F Von Wintzingerode, S Böcker, C Schlötelburg, NHL Chiu, N Storm, ...
Proceedings of the National Academy of Sciences 99 (10), 7039-7044, 2002
High-throughput MALDI-TOF discovery of genomic sequence polymorphisms
P Stanssens, M Zabeau, G Meersseman, G Remes, Y Gansemans, ...
Genome research 14 (1), 126-133, 2004
Computational mass spectrometry for metabolomics: identification of metabolites and small molecules
S Neumann, S Böcker
Analytical and bioanalytical chemistry 398 (7-8), 2779-2788, 2010
Computing fragmentation trees from tandem mass spectrometry data
F Rasche, A Svatos, RK Maddula, C Böttcher, S Böcker
Analytical Chemistry 83 (4), 1243-1251, 2011
Simple but fundamental limitations on supertree and consensus tree methods
M Steel, AWM Dress, S Böcker
Syst Biol 49 (2), 363-368, 2000
Computational mass spectrometry for small molecules
K Scheubert, F Hufsky, S Böcker
Journal of cheminformatics 5 (1), 12, 2013
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
Towards de novo identification of metabolites by analyzing tandem mass spectra
S Böcker, F Rasche
Bioinformatics 24 (16), i49-i55, 2008
Fragmentation-based methods and systems for sequence variation detection and discovery
D Van Den Boom, S Boecker
US Patent 7,820,378, 2010
Exact algorithms for cluster editing: Evaluation and experiments
S Böcker, S Briesemeister, GW Klau
Algorithmica 60 (2), 316-334, 2011
Identifying the unknowns by aligning fragmentation trees
F Rasche, K Scheubert, F Hufsky, T Zichner, M Kai, A Svatoš, S Böcker
Analytical chemistry 84 (7), 3417-3426, 2012
RNase T1 mediated base‐specific cleavage and MALDI‐TOF MS for high‐throughput comparative sequence analysis
R Hartmer, N Storm, S Boecker, CP Rodi, F Hillenkamp, C Jurinke, ...
Nucleic acids research 31 (9), e47-e47, 2003
Novel mass spectrometry-based tool for genotypic identification of mycobacteria
M Lefmann, C Honisch, S Böcker, N Storm, F von Wintzingerode, ...
Journal of clinical microbiology 42 (1), 339-346, 2004
Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS
M Ehrich, S Böcker, D van den Boom
Nucleic acids research 33 (4), e38-e38, 2005
Going weighted: Parameterized algorithms for cluster editing
S Böcker, S Briesemeister, QBA Bui, A Truß
Theoretical Computer Science 410 (52), 5467-5480, 2009
Unbiased transcriptional comparisons of generalist and specialist herbivores feeding on progressively defenseless Nicotiana attenuata plants
G Govind, O Mittapalli, T Griebel, S Allmann, S Böcker, IT Baldwin
PloS one 5 (1), 2010
Critical assessment of small molecule identification 2016: automated methods
EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ...
Journal of cheminformatics 9 (1), 22, 2017
Computational mass spectrometry for small-molecule fragmentation
F Hufsky, K Scheubert, S Böcker
TrAC Trends in Analytical Chemistry 53, 41-48, 2014
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