Rui Benfeitas
Rui Benfeitas
NBIS - National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm
Verified email at scilifelab.se - Homepage
Title
Cited by
Cited by
Year
A pathology atlas of the human cancer transcriptome
M Uhlen, C Zhang, S Lee, E Sjöstedt, L Fagerberg, G Bidkhori, ...
Science 357 (6352), eaan2507, 2017
11212017
Hydrogen peroxide metabolism and sensing in human erythrocytes: a validated kinetic model and reappraisal of the role of peroxiredoxin II
R Benfeitas, G Selvaggio, F Antunes, PMBM Coelho, A Salvador
Free Radical Biology and Medicine 74, 35-49, 2014
582014
Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes
G Bidkhori, R Benfeitas, M Klevstig, C Zhang, J Nielsen, M Uhlen, J Boren, ...
Proceedings of the National Academy of Sciences 115 (50), E11874-E11883, 2018
502018
New challenges to study heterogeneity in cancer redox metabolism
R Benfeitas, M Uhlen, J Nielsen, A Mardinoglu
Frontiers in cell and developmental biology 5, 65, 2017
352017
TCSBN: a database of tissue and cancer specific biological networks
S Lee, C Zhang, M Arif, Z Liu, R Benfeitas, G Bidkhori, S Deshmukh, ...
Nucleic acids research 46 (D1), D595-D600, 2018
302018
Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning
B Turanli, C Zhang, W Kim, R Benfeitas, M Uhlen, KY Arga, A Mardinoglu
EBioMedicine 42, 386-396, 2019
252019
Understanding the representative gut microbiota dysbiosis in metformin-treated type 2 diabetes patients using genome-scale metabolic modeling
D Rosario, R Benfeitas, G Bidkhori, C Zhang, M Uhlen, S Shoaie, ...
Frontiers in physiology 9, 775, 2018
222018
Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells
S Appelberg, S Gupta, S Svensson Akusjärvi, AT Ambikan, F Mikaeloff, ...
Emerging microbes & infections 9 (1), 1748-1760, 2020
192020
Dysregulation in mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells
S Appelberg, S Gupta, AT Ambikan, F Mikaeloff, A Vegvari, SS Akusjarvi, ...
bioRxiv, 2020
192020
Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis
R Benfeitas, G Bidkhori, B Mukhopadhyay, M Klevstig, M Arif, C Zhang, ...
EBioMedicine 40, 471-487, 2019
192019
Metabolic network-based identification and prioritization of anticancer targets based on expression data in hepatocellular carcinoma
G Bidkhori, R Benfeitas, E Elmas, MN Kararoudi, M Arif, M Uhlen, ...
Frontiers in physiology 9, 916, 2018
162018
A pathology atlas of the human cancer transcriptome. Science 357: eaan2507
M Uhlen, C Zhang, S Lee, E Sjöstedt, L Fagerberg, G Bidkhori, ...
142017
Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome
A Lovric, M Granér, E Bjornson, M Arif, R Benfeitas, K Nyman, M Ståhlman, ...
Scientific reports 8 (1), 1-14, 2018
122018
ESS: a tool for genome-scale quantification of essentiality score for reaction/genes in constraint-based modeling
C Zhang, G Bidkhori, R Benfeitas, S Lee, M Arif, M Uhlén, A Mardinoglu
Frontiers in physiology 9, 1355, 2018
62018
Identification of line‐specific strategies for improving carotenoid production in synthetic maize through data‐driven mathematical modeling
J Comas, R Benfeitas, E Vilaprinyo, A Sorribas, F Solsona, G Farré, ...
The Plant Journal 87 (5), 455-471, 2016
42016
The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non‐alcoholic fatty liver disease
C Zhang, E Bjornson, M Arif, A Tebani, A Lovric, R Benfeitas, M Ozcan, ...
Molecular Systems Biology 16 (4), e9495, 2020
32020
RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models
C Zhang, S Lee, G Bidkhori, R Benfeitas, A Lovric, S Chen, M Uhlen, ...
BioRxiv, 663096, 2019
32019
Is the Peroxiredoxin 2/Thioredoxin/Thioredoxin Reductase system in human erythrocytes designed for redox signaling?
R Benfeitas, G Selvaggio, F Antunes, P Coelho, A Salvador
Free Radical Biology and Medicine 75, S24, 2014
22014
Epigenetic alterations in skin homing CD4+ CLA+ T cells of atopic dermatitis patients
N Acevedo, R Benfeitas, S Katayama, S Bruhn, A Andersson, G Wikberg, ...
Scientific Reports 10 (1), 1-18, 2020
2020
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning
E Mohammadi, R Benfeitas, H Turkez, J Boren, J Nielsen, M Uhlen, ...
Cancers 12 (9), 2694, 2020
2020
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