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Ignacio Faustino
Ignacio Faustino
Colonova
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Year
Parmbsc1: a refined force field for DNA simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature methods 13 (1), 55-58, 2016
8522016
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
6112021
Martini coarse-grained force field: extension to RNA
JJ Uusitalo, HI Ingólfsson, SJ Marrink, I Faustino
Biophysical journal 113 (2), 246-256, 2017
1382017
Coupled binding mechanism of three sodium ions and aspartate in the glutamate transporter homologue GltTk
A Guskov, S Jensen, I Faustino, SJ Marrink, DJ Slotboom
Nature Communications 7 (1), 13420, 2016
1122016
Exploring polymorphisms in B-DNA helical conformations
PD Dans, A Perez, I Faustino, R Lavery, M Orozco
Nucleic acids research 40 (21), 10668-10678, 2012
952012
Molecular mechanism of lipid nanodisk formation by styrene-maleic acid copolymers
M Xue, L Cheng, I Faustino, W Guo, SJ Marrink
Biophysical journal 115 (3), 494-502, 2018
882018
Unraveling the sequence-dependent polymorphic behavior of d (CpG) steps in B-DNA
PD Dans, I Faustino, F Battistini, K Zakrzewska, R Lavery, M Orozco
Nucleic acids research 42 (18), 11304-11320, 2014
852014
Photoswitching of DNA hybridization using a molecular motor
AS Lubbe, Q Liu, SJ Smith, JW De Vries, JCM Kistemaker, AH De Vries, ...
Journal of the American Chemical Society 140 (15), 5069-5076, 2018
772018
Targeting RNA structure in SMN2 reverses spinal muscular atrophy molecular phenotypes
A Garcia-Lopez, F Tessaro, HRA Jonker, A Wacker, C Richter, A Comte, ...
Nature communications 9 (1), 2032, 2018
642018
Toward a consensus view of duplex RNA flexibility
I Faustino, A Pérez, M Orozco
Biophysical journal 99 (6), 1876-1885, 2010
632010
Parmbsc: a refined force field for dna simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature 201, 5, 2016
452016
NAFlex: a web server for the study of nucleic acid flexibility
A Hospital, I Faustino, R Collepardo-Guevara, C González, JL Gelpí, ...
Nucleic Acids Research, 2013
412013
Improved nucleic acid descriptors for siRNA efficacy prediction
S Sciabola, Q Cao, M Orozco, I Faustino, RV Stanton
Nucleic acids research 41 (3), 1383-1394, 2013
302013
Membrane mediated toppling mechanism of the folate energy coupling factor transporter
I Faustino, H Abdizadeh, PCT Souza, A Jeucken, WK Stanek, A Guskov, ...
Nature Communications 11 (1), 1763, 2020
282020
Insight into the complete substrate-binding pocket of ThiT by chemical and genetic mutations
L Swier, L Monjas, F Reeßing, RC Oudshoorn, T Primke, MM Bakker, ...
MedChemComm 8 (5), 1121-1130, 2017
212017
Functionalization of the 3′‐Ends of DNA and RNA Strands with N‐ethyl‐N‐coupled Nucleosides: A Promising Approach To Avoid 3′‐Exonuclease‐Catalyzed Hydrolysis of Therapeutic …
M Terrazas, A Alagia, I Faustino, M Orozco, R Eritja
ChemBioChem 14 (4), 510-520, 2013
172013
The DNA-forming properties of 6-selenoguanine
I Faustino, C Curutchet, FJ Luque, M Orozco
Physical Chemistry Chemical Physics 16 (3), 1101-1110, 2014
162014
Molecular dynamics study of naturally existing cavity couplings in proteins
M Barbany, T Meyer, A Hospital, I Faustino, M D'Abramo, J Morata, ...
PloS one 10 (3), e0119978, 2015
112015
Unique tautomeric and recognition properties of thioketothymines?
I Faustino, A Avino, I Marchán, FJ Luque, R Eritja, M Orozco
Journal of the American Chemical Society 131 (35), 12845-12853, 2009
92009
cgHeliParm: analysis of dsDNA helical parameters for coarse-grained MARTINI molecular dynamics simulations
I Faustino, SJ Marrink
Bioinformatics 33 (23), 3813-3815, 2017
42017
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Articles 1–20