| Extensive impact of non-antibiotic drugs on human gut bacteria L Maier, M Pruteanu, M Kuhn, G Zeller, A Telzerow, EE Anderson, ... Nature 555 (7698), 623-628, 2018 | 1074 | 2018 |
| Uncovering transcriptional regulation of metabolism by using metabolic network topology KR Patil, J Nielsen Proceedings of the national academy of sciences 102 (8), 2685-2689, 2005 | 611 | 2005 |
| Evolutionary programming as a platform for in silico metabolic engineering KR Patil, I Rocha, J Förster, J Nielsen BMC bioinformatics 6 (1), 1-12, 2005 | 507 | 2005 |
| Metabolic dependencies drive species co-occurrence in diverse microbial communities A Zelezniak, S Andrejev, O Ponomarova, DR Mende, P Bork, KR Patil Proceedings of the National Academy of Sciences 112 (20), 6449-6454, 2015 | 476 | 2015 |
| Towards standards for human fecal sample processing in metagenomic studies PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ... Nature biotechnology 35 (11), 1069-1076, 2017 | 459 | 2017 |
| OptFlux: an open-source software platform for in silico metabolic engineering I Rocha, P Maia, P Evangelista, P Vilaça, S Soares, JP Pinto, J Nielsen, ... BMC systems biology 4 (1), 1-12, 2010 | 417 | 2010 |
| The metabolic response of heterotrophic Arabidopsis cells to oxidative stress CJ Baxter, H Redestig, N Schauer, D Repsilber, KR Patil, J Nielsen, ... Plant physiology 143 (1), 312-325, 2007 | 282 | 2007 |
| Improved vanillin production in baker's yeast through in silico design AR Brochado, C Matos, BL Møller, J Hansen, UH Mortensen, KR Patil Microbial cell factories 9 (1), 1-15, 2010 | 259 | 2010 |
| Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering MA Asadollahi, J Maury, KR Patil, M Schalk, A Clark, J Nielsen Metabolic engineering 11 (6), 328-334, 2009 | 243 | 2009 |
| Fast automated reconstruction of genome-scale metabolic models for microbial species and communities D Machado, S Andrejev, M Tramontano, KR Patil Nucleic acids research 46 (15), 7542-7553, 2018 | 236 | 2018 |
| Use of genome-scale microbial models for metabolic engineering KR Patil, M Åkesson, J Nielsen Current opinion in biotechnology 15 (1), 64-69, 2004 | 207 | 2004 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 203* | 2020 |
| Metabolic interactions in microbial communities: untangling the Gordian knot O Ponomarova, KR Patil Current opinion in microbiology 27, 37-44, 2015 | 200 | 2015 |
| Yeast creates a niche for symbiotic lactic acid bacteria through nitrogen overflow O Ponomarova, N Gabrielli, DC Sévin, M Mülleder, K Zirngibl, K Bulyha, ... Cell systems 5 (4), 345-357. e6, 2017 | 189 | 2017 |
| Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory JM Otero, D Cimini, KR Patil, SG Poulsen, L Olsson, J Nielsen PloS one 8 (1), e54144, 2013 | 179 | 2013 |
| Integration of metabolome data with metabolic networks reveals reporter reactions T Cakir, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen Molecular systems biology 2 (1), 50, 2006 | 164 | 2006 |
| Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium A Montagud, E Navarro, P Fernandez de Cordoba, JF Urchueguía, ... BMC systems biology 4 (1), 1-16, 2010 | 142 | 2010 |
| Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks AP Oliveira, KR Patil, J Nielsen BMC systems biology 2 (1), 1-16, 2008 | 142 | 2008 |
| Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies M Tramontano, S Andrejev, M Pruteanu, M Klünemann, M Kuhn, ... Nature microbiology 3 (4), 514-522, 2018 | 135 | 2018 |
| BioMet Toolbox: genome-wide analysis of metabolism M Cvijovic, R Olivares-Hernï¿ ½ndez, R Agren, N Dahr, W Vongsangnak, ... Nucleic acids research 38 (suppl_2), W144-W149, 2010 | 129 | 2010 |
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
