Jesper J. Madsen
Jesper J. Madsen
Research Assistant Professor, Department of Global Health, University of South Florida
Verified email at
Cited by
Cited by
Acid activation mechanism of the influenza A M2 proton channel
R Liang, JMJ Swanson, JJ Madsen, M Hong, WF DeGrado, GA Voth
Proceedings of the National Academy of Sciences 113 (45), E6955–E6964, 2016
Binding of serotonin to lipid membranes
GH Peters, C Wang, N Cruys-Bagger, GF Velardez, JJ Madsen, P Westh
Journal of the American Chemical Society 135 (6), 2164-2171, 2013
Factor VIII Interacts with the Endocytic Receptor Low-Density Lipoprotein Receptor-Related Protein 1 via an Extended Surface Comprising 'Hot-Spot' Lysine Residues
M van den Biggelaar, JJ Madsen, JH Faber, MG Zuurveld, ...
Journal of Biological Chemistry 290 (27), 16463-16476, 2015
Interaction of neurotransmitters with a phospholipid bilayer: a molecular dynamics study
GH Peters, M Werge, MN Elf-Lind, JJ Madsen, GF Velardez, P Westh
Chemistry and physics of lipids 184, 7-17, 2014
Entropic forces drive clustering and spatial localization of influenza A M2 during viral budding
JJ Madsen, JMA Grime, JS Rossman, GA Voth
Proceedings of the National Academy of Sciences 115 (37), E8595–E8603, 2018
Tissue factor activates allosteric networks in factor VIIa through structural and dynamic changes
JJ Madsen, E Persson, OH Olsen
Journal of Thrombosis and Haemostasis 13 (2), 262-267, 2015
Secretory Phospholipase A2 Activity toward Diverse Substrates
JJ Madsen, L Linderoth, AK Subramanian, TL Andresen, GH Peters
The Journal of Physical Chemistry B 115 (21), 6853-6861, 2011
Systematic coarse-grained lipid force fields with semiexplicit solvation via virtual sites
AJ Pak, T Dannenhoffer-Lafage, JJ Madsen, GA Voth
Journal of chemical theory and computation 15 (3), 2087-2100, 2019
Highly Coarse-Grained Representations of Transmembrane Proteins
JJ Madsen, AV Sinitskiy, J Li, GA Voth
Journal of Chemical Theory and Computation 13 (2), 935-944, 2017
Molecular Basis of Enhanced Activity in Factor VIIa-Trypsin Variants Conveys Insights into Tissue Factor-Mediated Allosteric Regulation of Factor VIIa Activity
AB Sorensen, JJ Madsen, LA Svensson, AA Pedersen, H Østergaard, ...
Journal of Biological Chemistry 291 (9), 4671-4683, 2016
Membrane interaction of the factor VIIIa discoidin domains in atomistic detail
JJ Madsen, YZ Ohkubo, GH Peters, JH Faber, E Tajkhorshid, OH Olsen
Biochemistry 54, 6123-6131, 2015
Headgroup structure and cation binding in phosphatidylserine lipid bilayers
H Antila, P Buslaev, F Favela-Rosales, TM Ferreira, I Gushchin, ...
The Journal of Physical Chemistry B 123 (43), 9066-9079, 2019
Small-Angle X-ray Scattering Data in Combination with RosettaDock Improves the Docking Energy Landscape
P Sønderby, Å Rinnan, JJ Madsen, P Harris, JT Bukrinski, GH Peters
Journal of Chemical Information and Modeling 57 (10), 2463-2475, 2017
Theoretical Assessment of Fluorinated Phospholipids in the Design of Liposomal Drug-Delivery Systems
JJ Madsen, P Fristrup, GH Peters
The Journal of Physical Chemistry B 120 (36), 9661–9671, 2016
The length of the linker between the epidermal growth factor‐like domains in factor VIIa is critical for a productive interaction with tissue factor
E Persson, JJ Madsen, OH Olsen
Protein Science 23 (12), 1717-1727, 2014
Efficient simulation of tunable lipid assemblies across scales and resolutions
J Grime, JJ Madsen
arXiv preprint arXiv:1910.05362, 2019
Cholesterol Alters the Orientation and Activity of the Influenza Virus M2 Amphipathic Helix in the Membrane
A Martyna, B Bahsoun, JJ Madsen, FSJS Jackson, MD Badham, GA Voth, ...
The Journal of Physical Chemistry B, 2020
[CompChemHighlights] Open Graph Benchmark: Datasets for Machine Learning on Graphs by Hu et al arXiv:2005:00687
JJ Madsen, 2020
Water-Intake and Water-Molecule Paths to the Active Site of Secretory Phospholipase A2 Studied Using MD Simulations and the Tracking Tool AQUA-DUCT
HD Tjørnelund, JJ Madsen, GHJ Peters
The Journal of Physical Chemistry B 124 (10), 1881-1891, 2020
[CompChemHighlights] On the Completeness of Atomic Structure Representations by Pozdnyakov, Willatt et al. arXiv:2001:11696
JJ Madsen …, 2020
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