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Yong E. Zhang
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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
L Kong, Y Zhang, ZQ Ye, XQ Liu, SQ Zhao, L Wei, G Gao
Nucleic acids research 35 (suppl_2), W345-W349, 2007
25182007
Gene expression across mammalian organ development
M Cardoso-Moreira, J Halbert, D Valloton, B Velten, C Chen, Y Shao, ...
Nature 571 (7766), 505-509, 2019
5182019
Divergent lncRNAs Regulate Gene Expression and Lineage Differentiation in Pluripotent Cells
S Luo, JY Lu, L Liu, Y Yin, C Chen, X Han, B Wu, R Xu, W Liu, P Yan, ...
Cell Stem Cell 18 (5), 637-652, 2016
3782016
Tight Junction–associated MARVEL Proteins MarvelD3, Tricellulin, and Occludin Have Distinct but Overlapping Functions
DR Raleigh, AM Marchiando, Y Zhang, L Shen, H Sasaki, Y Wang, ...
Molecular biology of the cell 21 (7), 1200-1213, 2010
3652010
New genes in Drosophila quickly become essential
S Chen, YE Zhang, M Long
Science 330 (6011), 1682-1685, 2010
3022010
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
L Chen, Q Qiu, Y Jiang, K Wang, Z Lin, Z Li, F Bibi, Y Yang, J Wang, ...
Science 364 (6446), eaav6202, 2019
3012019
Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau
Y Qu, H Zhao, N Han, G Zhou, G Song, B Gao, S Tian, J Zhang, R Zhang, ...
Nature communications 4, 2071, 2013
2442013
SPD—a web-based secreted protein database
Y Chen, Y Zhang, Y Yin, G Gao, S Li, Y Jiang, X Gu, J Luo
Nucleic acids research 33 (suppl_1), D169-D173, 2005
2312005
Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome
YE Zhang, MD Vibranovski, P Landbck, GAB Marais, M Long
PLoS biology 8 (10), 2527, 2010
1982010
Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
Y Zhang, XS Liu, QR Liu, L Wei
Nucleic acids research 34 (12), 3465-3475, 2006
1972006
Accelerated recruitment of new brain development genes into the human genome
YE Zhang, P Landback, MD Vibranovski, M Long
PLoS biology 9 (10), e1001179, 2011
1892011
Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs
C Xie, YE Zhang, JY Chen, CJ Liu, WZ Zhou, Y Li, M Zhang, R Zhang, ...
PLoS genetics 8 (9), e1002942, 2012
1622012
Age-dependent chromosomal distribution of male-biased genes in Drosophila
YE Zhang, MD Vibranovski, BH Krinsky, M Long
Genome research 20 (11), 1526-1533, 2010
1422010
A human-specific de novo protein-coding gene associated with human brain functions
CY Li, Y Zhang, Z Wang, Y Zhang, C Cao, PW Zhang, SJ Lu, XM Li, Q Yu, ...
PLoS computational biology 6 (3), e1000734, 2010
1332010
Rapid evolution of protein diversity by de novo origination in Oryza
L Zhang, Y Ren, T Yang, G Li, J Chen, AR Gschwend, Y Yu, G Hou, J Zi, ...
Nature ecology & evolution 3 (4), 679-690, 2019
1302019
General gene movement off the X chromosome in the Drosophila genus
MD Vibranovski, Y Zhang, M Long
Genome research 19 (5), 897-903, 2009
1302009
Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease
M Airavaara, O Pletnikova, ME Doyle, YE Zhang, JC Troncoso, QR Liu
Journal of Biological Chemistry 286 (52), 45093-45102, 2011
1242011
Resurrection of endogenous retroviruses during aging reinforces senescence
X Liu, Z Liu, Z Wu, J Ren, Y Fan, L Sun, G Cao, Y Niu, B Zhang, Q Ji, ...
Cell, 2023
1022023
RNA editome in rhesus macaque shaped by purifying selection
JY Chen, Z Peng, R Zhang, XZ Yang, BCM Tan, H Fang, CJ Liu, M Shi, ...
PLoS genetics 10 (4), e1004274, 2014
862014
Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome
X Ni, YE Zhang, N Nègre, S Chen, M Long, KP White
PLoS biology 10 (11), e1001420, 2012
752012
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