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Ilpo Vattulainen
Ilpo Vattulainen
Professor of Biological Physics, Department of Physics, University of Helsinki
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Year
Molecular lipidomics of exosomes released by PC-3 prostate cancer cells
A Llorente, T Skotland, T Sylvänne, D Kauhanen, T Róg, A Orłowski, ...
Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2013
6722013
Ordering effects of cholesterol and its analogues
T Róg, M Pasenkiewicz-Gierula, I Vattulainen, M Karttunen
Biochimica et Biophysica Acta (BBA)-Biomembranes 1788 (1), 97-121, 2009
6252009
Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions
M Patra, M Karttunen, MT Hyvönen, E Falck, P Lindqvist, I Vattulainen
Biophysical journal 84 (6), 3636-3645, 2003
5072003
Under the influence of alcohol: the effect of ethanol and methanol on lipid bilayers
M Patra, E Salonen, E Terama, I Vattulainen, R Faller, BW Lee, ...
Biophysical journal 90 (4), 1121-1135, 2006
4112006
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
3792021
Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers
E Falck, M Patra, M Karttunen, MT Hyvönen, I Vattulainen
Biophysical journal 87 (2), 1076-1091, 2004
3342004
Assessing the nature of lipid raft membranes
PS Niemelä, S Ollila, MT Hyvönen, M Karttunen, I Vattulainen
PLoS computational biology 3 (2), e34, 2007
3042007
Multiscale modeling of emergent materials: biological and soft matter
T Murtola, A Bunker, I Vattulainen, M Deserno, M Karttunen
Physical Chemistry Chemical Physics 11 (12), 1869-1892, 2009
3002009
How would you integrate the equations of motion in dissipative particle dynamics simulations?
P Nikunen, M Karttunen, I Vattulainen
Computer physics communications 153 (3), 407-423, 2003
2712003
BODIPY‐cholesterol: a new tool to visualize sterol trafficking in living cells and organisms
M Hölttä‐Vuori, RL Uronen, J Repakova, E Salonen, I Vattulainen, ...
Traffic 9 (11), 1839-1849, 2008
2642008
Coarse-graining polymers with the MARTINI force-field: polystyrene as a benchmark case
G Rossi, L Monticelli, SR Puisto, I Vattulainen, T Ala-Nissila
Soft Matter 7 (2), 698-708, 2011
2592011
Protein crowding in lipid bilayers gives rise to non-Gaussian anomalous lateral diffusion of phospholipids and proteins
JH Jeon, M Javanainen, H Martinez-Seara, R Metzler, I Vattulainen
Physical Review X 6 (2), 021006, 2016
2582016
Effect of NaCl and KCl on phosphatidylcholine and phosphatidylethanolamine lipid membranes: insight from atomic-scale simulations for understanding salt-induced effects in the …
AA Gurtovenko, I Vattulainen
The Journal of Physical Chemistry B 112 (7), 1953-1962, 2008
2572008
Association of lipidome remodeling in the adipocyte membrane with acquired obesity in humans
KH Pietiläinen, T Rog, T Seppänen-Laakso, S Virtue, P Gopalacharyulu, ...
PLoS biology 9 (6), e1000623, 2011
2552011
Antidepressant drugs act by directly binding to TRKB neurotrophin receptors
PC Casarotto, M Girych, SM Fred, V Kovaleva, R Moliner, G Enkavi, ...
Cell 184 (5), 1299-1313. e19, 2021
2542021
Lipid bilayers driven to a wrong lane in molecular dynamics simulations by subtle changes in long-range electrostatic interactions
M Patra, M Karttunen, MT Hyvönen, E Falck, I Vattulainen
The Journal of Physical Chemistry B 108 (14), 4485-4494, 2004
2372004
Integration schemes for dissipative particle dynamics simulations: From softly interacting systems towards hybrid models
I Vattulainen, M Karttunen, G Besold, JM Polson
The Journal of chemical physics 116 (10), 3967-3979, 2002
2372002
3D pressure field in lipid membranes and membrane-protein complexes
OHS Ollila, HJ Risselada, M Louhivuori, E Lindahl, I Vattulainen, ...
Physical review letters 102 (7), 078101, 2009
2362009
Cholesterol modulates glycolipid conformation and receptor activity
D Lingwood, B Binnington, T Róg, I Vattulainen, M Grzybek, Ü Coskun, ...
Nature chemical biology 7 (5), 260-262, 2011
2272011
Polyunsaturation in lipid membranes: dynamic properties and lateral pressure profiles
S Ollila, MT Hyvönen, I Vattulainen
The Journal of Physical Chemistry B 111 (12), 3139-3150, 2007
2262007
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