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Minji Kim
Minji Kim
Verified email at umich.edu
Title
Cited by
Cited by
Year
Multiplex chromatin interactions with single-molecule precision
M Zheng, SZ Tian, D Capurso, M Kim, R Maurya, B Lee, E Piecuch, ...
Nature 566 (7745), 558-562, 2019
2032019
HyDRA: gene prioritization via hybrid distance-score rank aggregation
M Kim, F Farnoud, O Milenkovic
Bioinformatics 31 (7), 1034-1043, 2015
312015
ChIA-PIPE: a fully automated pipeline for comprehensive ChIA-PET data analysis and visualization
B Lee, J Wang, L Cai, M Kim, S Namburi, H Tjong, Y Feng, P Wang, ...
Science advances 6 (28), eaay2078, 2020
212020
Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNA
M Kim, A Kreig, CY Lee, HT Rube, J Calvert, JS Song, S Myong
Nucleic Acids Research 272, 2016
212016
MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression
M Kim, X Zhang, JG Ligo, F Farnoud, VV Veeravalli, O Milenkovic
BMC bioinformatics 17 (1), 94, 2016
172016
In situ Chromatin Interaction Analysis Using Paired‐End Tag Sequencing
P Wang, Y Feng, K Zhu, H Chai, Y Chang, X Yang, X Liu, C Shen, E Gega, ...
Current protocols 1 (8), e174, 2021
122021
MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms
M Kim, M Zheng, SZ Tian, B Lee, JH Chuang, Y Ruan
Genome biology 20, 1-13, 2019
82019
ChIPWig: a random access-enabling lossless and lossy compression method for ChIP-seq data
V Ravanmehr, M Kim, Z Wang, O Milenković
Bioinformatics 34 (6), 911-919, 2018
62018
ChIA-DropBox: a novel analysis and visualization pipeline for multiplex chromatin interactions
SZ Tian, D Capurso, M Kim, B Lee, M Zheng, Y Ruan
bioRxiv, 613034, 2019
42019
TeachEnG: a Teaching Engine for Genomics
M Kim, Y Kim, L Qian, J Song
Bioinformatics 33 (20), 3296-3298, 2017
42017
MetaPar: metagenomic sequence assembly via iterative reclassification
M Kim, JG Ligo, A Emad, F Farnoud, O Milenkovic, VV Veeravalli
2013 IEEE Global Conference on Signal and Information Processing, 43-46, 2013
42013
pyBedGraph: a python package for fast operations on 1D genomic signal tracks
HB Zhang, M Kim, JH Chuang, Y Ruan
Bioinformatics 36 (10), 3234-3235, 2020
32020
Gene prioritization via weighted Kendall rank aggregation
M Kim, F Raisali, F Farnoud, O Milenkovic
2013 5th IEEE International Workshop on Computational Advances in Multi …, 2013
32013
MCUIUC—A new framework for metagenomic read compression
JG Ligo, M Kim, A Emad, O Milenkovic, VV Veeravalli
2013 IEEE Information Theory Workshop (ITW), 1-5, 2013
32013
Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons
B Del Blanco, S Niñerola, AM Martín-González, J Paraíso-Luna, M Kim, ...
Nature Communications 15 (1), 1781, 2024
2024
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Articles 1–15