Peter Kasson
Peter Kasson
Associate Professor, University of Virginia and Uppsala University
Verified email at virginia.edu
Title
Cited by
Cited by
Year
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ...
Bioinformatics 29 (7), 845-854, 2013
48442013
Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece
DL Ensign, PM Kasson, VS Pande
Journal of molecular biology 374 (3), 806-816, 2007
2192007
Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion
PM Kasson, NW Kelley, N Singhal, M Vrljic, AT Brunger, VS Pande
Proceedings of the National Academy of Sciences 103 (32), 11916-11921, 2006
1522006
Formation of a highly peptide-receptive state of class II MHC
JD Rabinowitz, M Vrljic, PM Kasson, MN Liang, R Busch, JJ Boniface, ...
Immunity 9 (5), 699-709, 1998
1461998
Control of membrane fusion mechanism by lipid composition: predictions from ensemble molecular dynamics
PM Kasson, VS Pande
PLoS Computational Biology 3 (11), e220, 2007
1022007
Atomic-resolution simulations predict a transition state for vesicle fusion defined by contact of a few lipid tails
PM Kasson, E Lindahl, VS Pande
PLoS Comput Biol 6 (6), e1000829, 2010
952010
Persistent voids: a new structural metric for membrane fusion
PM Kasson, A Zomorodian, S Park, N Singhal, LJ Guibas, VS Pande
Bioinformatics 23 (14), 1753-1759, 2007
912007
Copernicus: A new paradigm for parallel adaptive molecular dynamics
S Pronk, P Larsson, I Pouya, GR Bowman, IS Haque, K Beauchamp, ...
Proceedings of 2011 International Conference for High Performance Computing …, 2011
672011
Kinetics of Peptide Binding to the Class II MHC Protein I−Ek
PM Kasson, JD Rabinowitz, L Schmitt, MM Davis, HM McConnell
Biochemistry 39 (5), 1048-1058, 2000
672000
Lipid tail protrusion in simulations predicts fusogenic activity of influenza fusion peptide mutants and conformational models
P Larsson, PM Kasson
PLoS computational biology 9 (3), e1002950, 2013
592013
Science forum: Viral factors in influenza pandemic risk assessment
M Lipsitch, W Barclay, R Raman, CJ Russell, JA Belser, S Cobey, ...
Elife 5, e18491, 2016
572016
Science Forum: improving pandemic influenza risk assessment
CA Russell, PM Kasson, RO Donis, S Riley, J Dunbar, A Rambaut, ...
Elife 3, e03883, 2014
542014
Combining molecular dynamics with bayesian analysis to predict and evaluate ligand-binding mutations in influenza hemagglutinin
PM Kasson, DL Ensign, VS Pande
Journal of the American Chemical Society 131 (32), 11338-11340, 2009
492009
Dynamic heterogeneity controls diffusion and viscosity near biological interfaces
S Pronk, E Lindahl, PM Kasson
Nature communications 5 (1), 1-7, 2014
472014
Structure of the Neisserial Outer Membrane Protein Opa60: Loop Flexibility Essential to Receptor Recognition and Bacterial Engulfment
DA Fox, P Larsson, RH Lo, BM Kroncke, PM Kasson, L Columbus
Journal of the American Chemical Society 136 (28), 9938-9946, 2014
422014
Water ordering at membrane interfaces controls fusion dynamics
PM Kasson, E Lindahl, VS Pande
Journal of the American Chemical Society 133 (11), 3812-3815, 2011
392011
Molecular simulation workflows as parallel algorithms: The execution engine of copernicus, a distributed high-performance computing platform
S Pronk, I Pouya, M Lundborg, G Rotskoff, B Wesen, PM Kasson, ...
Journal of chemical theory and computation 11 (6), 2600-2608, 2015
382015
Ebolavirus entry requires a compact hydrophobic fist at the tip of the fusion loop
SM Gregory, P Larsson, EA Nelson, PM Kasson, JM White, LK Tamm
Journal of virology 88 (12), 6636-6649, 2014
362014
Molecular dynamics simulation of lipid reorientation at bilayer edges
PM Kasson, VS Pande
Biophysical journal 86 (6), 3744-3749, 2004
352004
Multiphasic effects of cholesterol on influenza fusion kinetics reflect multiple mechanistic roles
MK Domanska, D Wrona, PM Kasson
Biophysical journal 105 (6), 1383-1387, 2013
302013
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Articles 1–20