Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli RE Lenski, MJ Wiser, N Ribeck, ZD Blount, JR Nahum, JJ Morris, ... Proceedings of the Royal Society B: Biological Sciences 282 (1821), 20152292, 2015 | 167 | 2015 |
Coevolution drives the emergence of complex traits and promotes evolvability L Zaman, JR Meyer, S Devangam, DM Bryson, RE Lenski, C Ofria PLoS Biology 12 (12), e1002023, 2014 | 133 | 2014 |
Evolving digital ecological networks MA Fortuna, L Zaman, AP Wagner, C Ofria PLoS computational biology 9 (3), e1002928, 2013 | 84 | 2013 |
On the intrinsic sterility of 3D printing RY Neches, KJ Flynn, L Zaman, E Tung, N Pudlo PeerJ 4, e2661, 2016 | 83 | 2016 |
Coevolutionary dynamics shape the structure of bacteria-phage infection networks MA Fortuna, MA Barbour, L Zaman, AR Hall, A Buckling, J Bascompte Evolution 73 (5), 1001-1011, 2019 | 59 | 2019 |
The genotype-phenotype map of an evolving digital organism MA Fortuna, L Zaman, C Ofria, A Wagner PLoS computational biology 13 (2), e1005414, 2017 | 41 | 2017 |
Rapid host-parasite coevolution drives the production and maintenance of diversity in digital organisms L Zaman, S Devangam, C Ofria Proceedings of the 13th annual conference on Genetic and evolutionary …, 2011 | 30 | 2011 |
Model systems in ecology, evolution, and behavior: A call for diversity in our model systems and discipline MA Duffy, C García-Robledo, SP Gordon, NA Grant, DA Green, A Kamath, ... The American Naturalist 198 (1), 53-68, 2021 | 27 | 2021 |
Host-parasite coevolution promotes innovation through deformations in fitness landscapes A Gupta, L Zaman, HM Strobel, J Gallie, AR Burmeister, B Kerr, ES Tamar, ... Elife 11, e76162, 2022 | 22 | 2022 |
Non-adaptive origins of evolutionary innovations increase network complexity in interacting digital organisms MA Fortuna, L Zaman, A Wagner, J Bascompte Philosophical Transactions of the Royal Society B: Biological Sciences 372 …, 2017 | 17 | 2017 |
Artificial selection methods from evolutionary computing show promise for directed evolution of microbes A Lalejini, E Dolson, AE Vostinar, L Zaman Elife 11, e79665, 2022 | 14 | 2022 |
Symbiosis in digital evolution: Past, present, and future AE Vostinar, KG Skocelas, A Lalejini, L Zaman Frontiers in Ecology and Evolution 9, 739047, 2021 | 14 | 2021 |
Behavioral Strategy Chases Promote the Evolution of Prey Intelligence* AP Wagner, L Zaman, I Dworkin, C Ofria Evolution in action: Past, present and future: A festschrift in honor of …, 2020 | 10 | 2020 |
Improved adaptation in exogenously and endogenously changing environments JR Nahum, J West, BM Althouse, L Zaman, C Ofria, B Kerr Artificial Life Conference Proceedings, 306-313, 2017 | 9 | 2017 |
A road map for in vivo evolution experiments with blood‐borne parasitic microbes R Rodríguez‐Pastor, Y Shafran, N Knossow, R Gutiérrez, S Harrus, ... Molecular Ecology Resources 22 (8), 2843-2859, 2022 | 6 | 2022 |
Modeling the evolutionary dynamics of plasmids in spatial populations BD Connelly, L Zaman, PK McKinley, C Ofria Proceedings of the 13th annual conference on Genetic and evolutionary …, 2011 | 6 | 2011 |
Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks GE Bastien, RN Cable, C Batterbee, AJ Wing, L Zaman, MB Duhaime PLOS Computational Biology 20 (9), e1011649, 2024 | 5 | 2024 |
Investigating open-ended coevolution in digital organisms L Zaman Artificial Life Conference Proceedings, 258-259, 2018 | 5 | 2018 |
Social Structure and the Maintenance of Biodiversity. BD Connelly, L Zaman, C Ofria, PK McKinley ALIFE, 461-468, 2010 | 4 | 2010 |
Bartonella infections are prevalent in rodents despite efficient immune responses R Rodríguez-Pastor, AZ Hasik, N Knossow, E Bar-Shira, N Shahar, ... Parasites & Vectors 16 (1), 315, 2023 | 3 | 2023 |