Joana P. Gonçalves
Joana P. Gonçalves
Assistant Professor at TUDelft
Verified email at - Homepage
Cited by
Cited by
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
Candidate gene prioritization by network analysis of differential expression using machine learning approaches
D Nitsch, J Gonçalves, F Ojeda, B De Moor, Y Moreau
BMC bioinformatics 11 (1), 460, 2010
Predicting disease associations via biological network analysis
K Sun, JP Gonçalves, C Larminie, N Pržulj
BMC bioinformatics 15 (1), 304, 2014
BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data
J Gonçalves, S Madeira, A Oliveira
BMC research notes 2 (1), 124, 2009
PINTA: a web server for network-based gene prioritization from expression data
D Nitsch, LC Tranchevent, JP Gonçalves, JK Vogt, SC Madeira, Y Moreau
Nucleic Acids Research 39 (suppl 2), W334-W338, 2011
Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency
S Gisler, JP Gonçalves, W Akhtar, J de Jong, AV Pindyurin, LFA Wessels, M ...
Nature Communications, 2019
Interactogeneous: Disease Gene Prioritization Using Heterogeneous Networks and Full Topology Scores
JP Gonçalves, AP Francisco, Y Moreau, SC Madeira
PLOS ONE 7 (11), e49634, 2012
POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data
JP Gonçalves, M Grãos, AXCN Valente
Journal of The Royal Society Interface 6 (39), 881-896, 2009
LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification
JP Gonçalves, SC Madeira
IEEE/ACM Transactions on Computational Biology and Bioinformatics, doi:10 …, 2014
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses
JP Gonçalves, AP Francisco, NP Mira, MC Teixeira, I Sá-Correia, ...
Bioinformatics 27 (22), 3149-3157, 2011
Regulatory Snapshots: Integrative Mining of Regulatory Modules from Expression Time Series and Regulatory Networks
JP Gonçalves, RS Aires, AP Francisco, SC Madeira
PloS one 7 (5), e35977, 2012
e-BiMotif: combining sequence alignment and biclustering to unravel structured motifs
J Gonçalves, S Madeira
Advances in Bioinformatics, 181-191, 2010
Efficient Biclustering Algorithms for identifying transcriptional regulation relationships using time series gene expression data
SC Madeira, JP Gonçalves, AL Oliveira
INESC-ID Tec. Rep. 22/2007, 2007
AliBiMotif: Integrating alignment and biclustering to unravel Transcription Factor Binding Sites in DNA sequences
JP Gonçalves, Y Moreau, SC Madeira
International journal of data mining and bioinformatics 6 (2), 196-215, 2012
Heuristic approaches for time-lagged biclustering
JP Gonçalves, SC Madeira
Proceedings of the 12th International Workshop on Data Mining in …, 2013
Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks
JP Gonçalves, SC Madeira, Y Moreau
DyNaK 2010 Dynamic Networks and Knowledge Discovery, 53, 2010
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