Chiara Pallara
TitleCited byYear
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
892013
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
862016
Blind prediction of interfacial water positions in CAPRI
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ...
Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014
402014
Structural basis for the recruitment and activation of the Legionella phospholipase VipD by the host GTPase Rab5
M Lucas, AH Gaspar, C Pallara, AL Rojas, J Fernández-Recio, ...
Proceedings of the National Academy of Sciences 111 (34), E3514-E3523, 2014
312014
Structural basis for Rab1 de-AMPylation by the Legionella pneumophila effector SidD
Y Chen, I Tascón, MR Neunuebel, C Pallara, J Brady, LN Kinch, ...
PLoS pathogens 9 (5), e1003382, 2013
232013
Expanding the frontiers of protein–protein modeling: from docking and scoring to binding affinity predictions and other challenges
C Pallara, B Jiménez‐García, L Pérez‐Cano, M Romero‐Durana, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2192-2200, 2013
192013
Tetramerization-defects of p53 result in aberrant ubiquitylation and transcriptional activity
V Lang, C Pallara, A Zabala, S Lobato-Gil, F Lopitz-Otsoa, R Farrás, ...
Molecular oncology 8 (5), 1026-1042, 2014
132014
pyDock scoring for the new modeling challenges in docking: Protein–peptide, homo‐multimers, and domain–domain interactions
C Pallara, B Jiménez‐García, M Romero, IH Moal, J Fernández‐Recio
Proteins: Structure, Function, and Bioinformatics 85 (3), 487-496, 2017
62017
Conformational heterogeneity of unbound proteins enhances recognition in protein–protein encounters
C Pallara, M Rueda, R Abagyan, J Fernández-Recio
Journal of chemical theory and computation 12 (7), 3236-3249, 2016
52016
Interaction of photosystem I from Phaeodactylum tricornutum with plastocyanins as compared with its native cytochrome c6: reunion with a lost donor
P Bernal-Bayard, C Pallara, MC Castell, FP Molina-Heredia, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1847 (12), 1549-1559, 2015
52015
Structural Prediction of Protein–Protein Interactions by Docking: Application to Biomedical Problems
D Barradas-Bautista, M Rosell, C Pallara, J Fernández-Recio
Advances in protein chemistry and structural biology 110, 203-249, 2018
32018
Modeling binding affinity of pathological mutations for computational protein design
M Romero-Durana, C Pallara, F Glaser, J Fernández-Recio
Computational Protein Design, 139-159, 2017
22017
Intrinsically active MEK variants are differentially regulated by proteinases and phosphatases
M Ordan, C Pallara, G Maik-Rachline, T Hanoch, FL Gervasio, F Glaser, ...
Scientific reports 8 (1), 11830, 2018
12018
Molecular basis for the protective effects of low-density lipoprotein receptor-related protein 1 (LRP1)-derived peptides against LDL aggregation
A Benitez-Amaro, C Pallara, L Nasarre, A Rivas-Urbina, S Benitez, A Vea, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1861 (7), 1302-1316, 2019
2019
How experiments and molecular simulations can help understand selective C25-hydroxylation of vitamin D by fungal peroxygenases
F Lucas, ED Babot, M Cañellas, JC del Río, L Kalum, R Ullrich, ...
BOOK OF ABSTRACTS. VII International Conference on Molecular Recognition, 36-36, 2016
2016
Kbdock-Searching and organising the structural space of protein-protein interactions
MD Devignes, M Smaïl-Tabbone, D Ritchie
2016
Protein plasticity improves protein-protein binding description: PJ-013
C Pallara, J Fernández-Recio
Protein Science 24, 241-242, 2015
2015
pyDock performance in 5th CAPRI edition: from docking and scoring to binding affinity predictions and other challenges
C Pallara, B Jiménez-García, M Romero, J Fernandez-Recio
BSC Doctoral Symposium (2nd: 2015: Barcelona), 99-100, 2015
2015
Correction: Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD
Y Chen, I Tascón, MR Neunuebel, C Pallara, J Brady, LN Kinch, ...
PLoS pathogens 9 (7), 2013
2013
Exploring conformational selection mechanism in protein-protein association by docking: P25r-19
C Pallara, M Rueda, R Abagyan, J Fernández-Recio
The Febs Journal 279, 532-533, 2012
2012
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Articles 1–20