Richard Bonneau

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Joshua A. TuckerProfessor of Politics, Center for Social Media and Politics, New York UniversityVerified email at nyu.edu
Jonathan NaglerProfessor of Politics, New York UniversityVerified email at nyu.edu
P. Douglas RenfrewSimons FoundationVerified email at simonsfoundation.org
Dan LittmanSkirball Institute, NYU School of MedicineVerified email at med.nyu.edu
Emily R MiraldiCincinnati Children's HospitalVerified email at cchmc.org
David BakerUniversity of WashingtonVerified email at uw.edu
John JostProfessor of Psychology and Politics, New York UniversityVerified email at nyu.edu
Nitin BaligaProfessorVerified email at systemsbiology.org
Kevin DrewAssistant Professor, University of Illinois at ChicagoVerified email at uic.edu
Pablo BarberáAssociate Professor, Political Science and International Relations, USCVerified email at usc.edu
Aviv MadarDirector of Data science, Valo Health, Boston, MAVerified email at valohealth.com
Christian L. MüllerLudwig-Maximilians-Universität München; Helmholtz Zentrum München; Flatiron Institute, New YorkVerified email at helmholtz-muenchen.de
Kent KirshenbaumProfessor of Chemistry, New York UniversityVerified email at nyu.edu
Zachary D KurtzScientist, Lodo TherapeuticsVerified email at lodotherapeutics.com
Leroy HoodInstitute for Systems BiologyVerified email at systemsbiology.org
Aaron WattersSenior Software Engineer, Flatiron InstituteVerified email at flatironinstitute.org
Glenn ButterfossProteinQureVerified email at proteinqure.com
Brian KuhlmanUniversity of North CarolinaVerified email at email.unc.edu
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityVerified email at cabm.rutgers.edu
Paul ShannonInstitute for Systems BiologyVerified email at systemsbiology.org

Richard Bonneau

Other namesRichard A Bonneau, Rich Bonneau

Genentech

Verified email at gene.com - Homepage

ML-meets-structure networks biology drug discovery


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Tweeting from left to right: Is online political communication more than an echo chamber? P Barberá, JT Jost, J Nagler, JA Tucker, R Bonneau Psychological science 26 (10), 1531-1542, 2015	1740	2015
Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1645	2012
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts AG Baltz, M Munschauer, B Schwanhäusser, A Vasile, Y Murakawa, ... Molecular cell 46 (5), 674-690, 2012	1204	2012
A validated regulatory network for Th17 cell specification M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ... Cell 151 (2), 289-303, 2012	1135	2012
Sparse and compositionally robust inference of microbial ecological networks ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau PLoS computational biology 11 (5), e1004226, 2015	1031	2015
The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017	955	2017
Innate immune detection of the type III secretion apparatus through the NLRC4 inflammasome EA Miao, DP Mao, N Yudkovsky, R Bonneau, CG Lorang, SE Warren, ... Proceedings of the National Academy of Sciences 107 (7), 3076-3080, 2010	864	2010
Ab initio protein structure prediction of CASP III targets using ROSETTA KT Simons, R Bonneau, I Ruczinski, D Baker Proteins: Structure, Function, and Bioinformatics 37 (S3), 171-176, 1999	729	1999
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ... Genome biology 7, 1-16, 2006	641	2006
High-definition spatial transcriptomics for in situ tissue profiling S Vickovic, G Eraslan, F Salmén, J Klughammer, L Stenbeck, D Schapiro, ... Nature methods 16 (10), 987-990, 2019	602	2019
Structural bioinformatics J Gu, PE Bourne John Wiley & Sons, 2009	519	2009
An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses T Sano, W Huang, JA Hall, Y Yang, A Chen, SJ Gavzy, JY Lee, JW Ziel, ... Cell 163 (2), 381-393, 2015	502	2015
Ab initio protein structure prediction: progress and prospects R Bonneau, D Baker Annual review of biophysics and biomolecular structure 30 (1), 173-189, 2001	434	2001
How social media facilitates political protest: Information, motivation, and social networks JT Jost, P Barberá, R Bonneau, M Langer, M Metzger, J Nagler, J Sterling, ... Political psychology 39, 85-118, 2018	427	2018
Why are there hotspot mutations in the TP53 gene in human cancers? EH Baugh, H Ke, AJ Levine, RA Bonneau, CS Chan Cell Death & Differentiation 25 (1), 154-160, 2018	414	2018
Rosetta in CASP4: progress in ab initio protein structure prediction R Bonneau, J Tsai, I Ruczinski, D Chivian, C Rohl, CEM Strauss, D Baker Proteins: Structure, Function, and Bioinformatics 45 (S5), 119-126, 2001	399	2001
ICOS-based chimeric antigen receptors program bipolar T_H17/T_H1 cells S Guedan, X Chen, A Madar, C Carpenito, SE McGettigan, MJ Frigault, ... Blood, The Journal of the American Society of Hematology 124 (7), 1070-1080, 2014	375	2014
c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont M Xu, M Pokrovskii, Y Ding, R Yi, C Au, OJ Harrison, C Galan, Y Belkaid, ... Nature 554 (7692), 373-377, 2018	371	2018
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ... Genome research 14 (11), 2221-2234, 2004	371	2004
Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020	369	2020

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