Patrick Munk
Title
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Cited by
Year
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1-12, 2019
1392019
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
P Munk, BE Knudsen, O Lukjacenko, ASR Duarte, L Van Gompel, ...
Nature microbiology 3 (8), 898-908, 2018
682018
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
632020
Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Priemé, ...
MSystems 1 (5), 2016
572016
A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds
P Munk, VD Andersen, L de Knegt, MS Jensen, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy 72 (2), 385-392, 2016
502016
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
432019
The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries
L Van Gompel, REC Luiken, S Sarrazin, P Munk, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy, 2019
202019
The association between measurements of antimicrobial use and resistance in the faeces microbiota of finisher batches
VD Andersen, LV De Knegt, P Munk, MS Jensen, Y Agersø, FM Aarestrup, ...
Epidemiology & Infection 145 (13), 2827-2837, 2017
102017
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage. Nat. Commun. 10, 1124
RS Hendriksen, P Munk, P Njage, B van Bunnik, L McNally, ...
72019
Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition. mSystems. 2016; 1
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Prieme, ...
7
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach
RS Hendriksen, O Lukjancenko, P Munk, MH Hjelmsø, JR Verani, ...
PloS one 14 (10), e0222531, 2019
62019
Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries
REC Luiken, L Van Gompel, P Munk, S Sarrazin, P Joosten, ...
Journal of Antimicrobial Chemotherapy, 2019
52019
Validation of the register-based lifetime antimicrobial usage measurement for finisher batches based on comparison with recorded antimicrobial usage at farm level
VD Andersen, P Munk, LV de Knegt, MS Jensen, FM Aarestrup, H Vigre
Epidemiology & Infection 146 (4), 515-523, 2018
22018
Farm dust resistomes and bacterial microbiomes in European poultry and pig farms
REC Luiken, L Van Gompel, A Bossers, P Munk, P Joosten, RB Hansen, ...
Environment International 143, 105971, 2020
12020
Setting a baseline for global urban virome surveillance in sewage
DF Nieuwenhuijse, BBO Munnink, MVT Phan, P Munk, ...
Scientific reports 10 (1), 1-13, 2020
12020
Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance
ASR Duarte, KDC Stärk, P Munk, P Leekitcharoenphon, A Bossers, ...
Frontiers in Public Health 8, 38, 2020
12020
Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher’gut microbiomes
VD Andersen, FM Aarestrup, P Munk, MS Jensen, LV de Knegt, ...
Preventive Veterinary Medicine 174, 104853, 2020
12020
Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: A metagenome-wide cross-sectional study
L Van Gompel, REC Luiken, RB Hansen, P Munk, M Bouwknegt, L Heres, ...
Environment International 143, 105939, 2020
2020
The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children
DNM Osakunor, P Munk, T Mduluza, TN Petersen, C Brinch, A Ivens, ...
Communications Biology 3 (1), 1-11, 2020
2020
Antimicrobial resistance in hospital wastewater in Scotland: a cross-sectional metagenomics study
M Perry, B van Bunnik, L McNally, B Wee, P Munk, A Warr, B Moore, ...
The Lancet 394, S1, 2019
2019
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Articles 1–20